KEGG   Latimeria chalumnae (coelacanth): 102345981
Entry
102345981         CDS       T02913                                 
Symbol
TAF5L
Name
(RefSeq) TATA-box binding protein associated factor 5 like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102345981 (TAF5L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcm03021]
    102345981 (TAF5L)
   03036 Chromosome and associated proteins [BR:lcm03036]
    102345981 (TAF5L)
Transcription machinery [BR:lcm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     102345981 (TAF5L)
   Coactivators
    SAGA/TFTC/STAGA complex
     102345981 (TAF5L)
Chromosome and associated proteins [BR:lcm03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     102345981 (TAF5L)
    STAGA complex
     102345981 (TAF5L)
    TFTC complex
     102345981 (TAF5L)
    SAGA complex
     102345981 (TAF5L)
    SLIK complex
     102345981 (TAF5L)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 TFIID_NTD2 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT140_1st RMC1_N Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_WDR19_1st PEP5_VPS11_N Ge1_WD40 Beta-prop_IP5PC_F WD_LRWD1 Beta-prop_DCAF12 Nbas_N Mala_s_1-like
Other DBs
NCBI-GeneID: 102345981
NCBI-ProteinID: XP_014351485
LinkDB
Position
Un
AA seq 596 aa
MKRVRTEQIQMAAACYLKRRQYVDSDSALKQGLRLNQTAEEMAANLTGSYSVSEKQSVDV
HFGNYPCSCSSNFIVEQLARLICYLLPTDSDSQYSREVMPLLYPLFVYLHLDMVHNGLKS
AADSFYSRFHGMFLQNADQKDIIEQLQSTLTVQDISSNGKLHSFLDNKYVLSICEGGYHY
LLRYLQSDNNSALCKVLASRIHLEVQASQRTDYQLYTSGPSLRNDSNSLEPTDLPASILQ
NEAALDMLQDSIKRVKEGPPSLTTICFYAFHNTDQLLNTAEISPDSKLLASGFDNSCVKL
WSLRSKKLKLEPNQVDVSKINLACDILGEEDEDDERSMGTEMKILRGHCGPVYGTKFLSD
SSGLLSCSEDTSIRYWNLRSFTNTVLYHGHAYPVWDIDISPCSLYFASGSNDRTARLWTF
DRTCPLRIYAGHLADVDCIKFHPNSNYIATGSTDKTVRLWSTQQGNAVRLFTGHRGPVLS
LAFSPNGKYLASAGEDQRLKLWDLSSGALYKDMRGHTDNITSLAFSPDSSLIASASMDNS
VRLWDIRNTYCSATTDGSSSELIGVYTGQTNNVLSVQFMACNFLLVTGIAQENQEH
NT seq 1791 nt   +upstreamnt  +downstreamnt
atgaagcgagtacgcacagagcagatccagatggcagcagcttgctacctcaagcggcga
cagtatgtggattcggatagcgcactaaagcaaggactgcgattgaatcagacggctgaa
gagatggctgcaaatctgacaggtagctactcagtatcagaaaagcagagtgttgatgtt
cattttggaaactatccatgcagttgctcatctaactttattgtggaacaacttgcgaga
ctgatctgttatctgcttcctacagattcggactcacagtacagccgtgaagtaatgccg
cttctctatcccctctttgtgtacctccatctcgacatggttcacaatggtttgaaaagt
gcagcggacagcttctacagtcgtttccacgggatgttcctgcagaacgcagatcagaag
gacatcattgagcagctgcagtcgaccttgactgtgcaggatatttcttcaaatggcaag
ctgcattcttttttagacaacaagtacgtcctcagcatttgtgaaggtggctaccattac
ctcctccgctacctccagagtgacaacaatagtgctttgtgcaaggttcttgcgtcgcgt
atacacctggaagtgcaggcttctcagcgaacggactaccagctctacaccagtggcccg
tcattacgaaatgacagcaacagtctggagcccacagacttgcccgcttccatactgcag
aacgaagctgcactggacatgctgcaagacagtatcaagcgtgtcaaggaagggccccct
tcgctgacgacaatttgcttctacgcctttcacaatacggatcagttgctaaacacagcc
gagatttcgccagacagtaaattgcttgcctctggctttgacaactcctgcgtgaagcta
tggagcttgcgatcgaagaagctcaaattggaacccaatcaggtggacgtttcgaaaata
aatttggcttgcgatatcctgggtgaggaggatgaagatgatgaaagaagcatgggcaca
gaaatgaagatactgagggggcactgcggaccagtgtatggcactaaattcctatctgat
agctcaggactgctgtcttgttctgaggatacgtccatccgatactggaacctaagaagc
tttacaaacactgtgttatatcatggacatgcctatcctgtgtgggacattgatattagt
ccttgcagcctttattttgcaagtgggtcaaatgaccgtactgcaagactctggacattt
gaccggacatgtccgttacgcatatatgcaggtcacttagcagatgtggattgtatcaaa
ttccatccaaattcaaactacattgctactggctctacagataaaactgtgcgattgtgg
agcacgcagcaaggcaatgctgtaaggctctttactgggcatcgtggtcctgtgctttct
ctggcgttctcaccaaatgggaaatacttagcttcagctggtgaggaccagcggcttaag
ttgtgggatttatcttcgggtgcactttataaagatatgagaggccatactgacaacata
acgagccttgcttttagtcctgatagcagcttgattgcctctgcctcaatggataattca
gtaagactatgggacattcgtaacacttactgcagtgccacaactgatggctcttctagt
gagctcatcggcgtgtatacaggacagactaataatgtgttaagtgtgcagttcatggcc
tgcaactttctactagtaactggaatagcacaggaaaatcaagaacattag

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