Latimeria chalumnae (coelacanth): 102346081
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Entry
102346081 CDS
T02913
Symbol
RAD50
Name
(RefSeq) RAD50 double strand break repair protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03440
Homologous recombination
lcm03450
Non-homologous end-joining
lcm04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102346081 (RAD50)
03450 Non-homologous end-joining
102346081 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
102346081 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcm03032
]
102346081 (RAD50)
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102346081 (RAD50)
DNA replication proteins [BR:
lcm03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
102346081 (RAD50)
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
102346081 (RAD50)
BRCA1-C complex
102346081 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
102346081 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rad50_zn_hook
SbcC_Walker_B
AAA_21
AAA_23
zf-met
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
102346081
NCBI-ProteinID:
XP_014352959
LinkDB
All DBs
Position
Un
AA seq
1173 aa
AA seq
DB search
MISALGVSKAVLNSVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALDTLRQVRQKQ
GQRVRECQTELRYLKQNKEKAHEIQDQLTSKEAQLTASKENVKTINSQIDPLTKRLDEIE
RSLTTVMKIDNDIKALDSRKEQMEQDNQELEQKIETVFQGTDEQLREMYQNHQKTVKEKE
RRLTDCQRELERANREYGKFNRQKSELLVEQGRLQLQADRHQQNIRNRDSLVQSLAAQLE
LDGFDRVPFNERQINSFHKQVKERLDKDTDAANQMIREFEEKDSVKQAHIDEIRDKKTGL
EQTIHIKLDFQNKKQAELRSVKSELQKLEGSSDRIQELDQELLKADRELENAEAACTVEA
LKSEVIELQNEKVELARALRKLDQEMEVLNMHTTARTQLDMLKKDKTDKEEQIRKIKSRH
NEDLVQLLGYFPNKKQLEDWIYAKSKEVKQTQEKIAKINMDLASAEQSKSHITSELRRKE
EQLMSYEDKLFDVCGSQDFESDLDKLQDDIDKSSKQRAMLAGATAVYTQFISQLTEDNQP
CCPVCQRVFPSEAELQDIINDLQSKLRLVPDKLKTTETDLKRKEKRRDEMMGLKPIRQTI
NDLKERDVPELRNKQQNINRDIQHLKTEKDEQETLLATLASEEDCAKACVQDLSLMDRYQ
LELRDVERRIAQQAAKLQGVDVSRTVQQVNQEKQETQHKLDTVSGKIELKRKVIQDQQEQ
IQSLKSIVNDLRAEKLEISSNLQRRQQLEEQSAELATEIQSLYREIRDAKDQVSPLAAMV
EKLQQEKQELIERKNMCNREAQNKLNEIKEKVKNINIYIKEIEKYVREEKEEYKEQKETE
LQEAITQLNEAEKLKEKINKEIENIKQDINTQKIQERWLQDNLKLRKRMEELQEVEAKRK
QLLAEMGEMQVMKMKNERQQLTERLEELKKSHNLALGRQKGFEDEIMRFRKELRDPQFKD
AEENYREMMIIMRTTELANKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQD
IEYIEIRSDVDENASASDKRRSYNYRVVMVKGDTALDMRGRCSAGQKVLASLIIRLALAE
TFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQRNFQLLVITHDEDFVELLGR
SEYVEHFYRIRKNMDQCSEIVKCSVHSLTSYVH
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcgccctgggtgtttctaaagctgtgctgaacagtgttatattctgtcatcag
gaggactccaattggcccctgagtgaaggaaaagcactgaaacagaaattcgatgagatc
ttttctgccacaagatatatcaaagcattggatactcttcgtcaggtacgtcagaagcaa
ggtcagcgggtcagagagtgccagactgaactccggtatctaaaacagaacaaggaaaag
gcacacgaaattcaagatcaattgaccagcaaagaagcacagctcactgcttctaaagag
aatgtaaagaccatcaacagtcagattgaccccctgacgaaacgactggatgaaattgaa
cggagtctaacaacagtaatgaagattgacaatgatattaaagcccttgacagcagaaag
gagcagatggaacaagataaccaagaattagaacaaaaaatagagacggttttccagggg
acagatgaacagctgagagagatgtaccagaaccaccagaaaacagtgaaagaaaaggag
aggagactgactgactgccagcgtgagcttgagagagcaaaccgagaatacgggaaattt
aacaggcagaaatcagaattgctggtggagcaaggacgacttcagctacaagccgatcgc
caccagcagaacataagaaaccgggactccttggtccagtccttggcagcacagcttgag
ctagacggttttgatcgagtgccttttaatgagagacagattaacagtttccacaagcag
gtgaaggaaaggctggataaggatacagacgctgcaaatcaaatgataagagaatttgaa
gaaaaagattctgtgaagcaagctcatattgatgaaataagagacaaaaagactggacta
gagcaaaccattcacataaagctggactttcagaataagaagcaggcagagttgaggagt
gtgaagtctgaattacagaaattggagggatcgtctgataggattcaagaactggaccag
gaacttctgaaggctgaccgtgagctggagaatgcagaggcagcctgcacggtagaagcc
ttgaagtcggaagtaatagagctgcagaatgagaaagtggaactagcccgggcgttgcgt
aagctggaccaggagatggaggtgttaaatatgcacacaacagcaagaacgcagctggac
atgctgaaaaaagacaaaactgataaagaggaacagattcggaagataaaatccagacac
aatgaggatcttgtccagttgctgggatactttcctaacaaaaaacagcttgaagactgg
atttatgctaaatccaaggaggttaagcagacccaagaaaaaattgccaaaataaacatg
gacctggcatctgcagagcaaagtaaaagccacatcaccagtgagctacgacgaaaagag
gagcagctaatgagctatgaggataaactttttgatgtatgtggaagccaggattttgaa
agtgatcttgacaaactgcaggatgatattgacaagtcttccaagcaacgagctatgctt
gctggagcaacagcagtgtacacccagtttattagccagctaaccgaggacaatcagcca
tgctgtcccgtgtgccagcgggtcttcccttcggaggctgagctgcaagacatcatcaac
gacctacagtccaaactgcgccttgttccagataaactcaagacaacggaaactgacctg
aagaggaaagagaagagacgggatgagatgatggggcttaagcctataagacaaactatt
aatgacttgaaagaaagggacgtgcccgaattgaggaacaaacagcagaacataaaccgt
gatattcagcatctgaagactgagaaggatgaacaggaaaccctgctggccacactggca
tccgaggaggattgtgcaaaagcatgtgtgcaggacctttcactgatggacaggtatcag
ctggagctaagagatgttgagcgcagaatagcacaacaggctgccaagctgcagggagta
gacgtcagtcgcacagtacagcaagtgaatcaagaaaaacaagaaactcaacacaaacta
gacacagtttctggaaaaattgaactgaagcgtaaggtgatacaagatcagcaagagcag
atccagtccctgaaaagcattgtgaatgaccttcgggcagagaaactggagatttccagt
aacttgcagcgccgtcaacagctggaggagcagagtgcagagctcgctacagagatacag
tctctctacagagagataagggatgctaaagaccaagtgtctccattggcagctatggtg
gaaaagctgcagcaagagaaacaggagctgattgaaaggaagaacatgtgcaacagagaa
gcccaaaataagctgaacgaaattaaggaaaaggttaaaaacattaacatctacataaaa
gaaattgaaaagtatgttcgagaagagaaagaagaatataaagagcaaaaagaaactgag
ttgcaggaggcaatcactcagttaaatgaagcagaaaaactgaaagagaagattaataaa
gagattgaaaacattaaacaggacatcaacacacagaagattcaagagagatggctgcag
gacaatttaaagttacgaaaacgaatggaagagctgcaagaggtcgaggctaaacgaaag
cagctgctggcagaaatgggggagatgcaagtgatgaagatgaaaaatgaacggcagcag
ctgacagaaagactggaggagctcaagaagtctcacaacttggctcttggccgacaaaaa
ggttttgaagatgagatcatgcgcttcaggaaggagcttcgagatccccaatttaaggat
gcagaggaaaactatagagaaatgatgatcattatgaggacaacagaactagcaaacaaa
gatcttgatatctactataagacactggaccaagcaataatgaaatttcacagtatgaaa
atggaagaaatcaataaaattatacgggacttgtggcgaagcacctaccgagggcaagat
attgagtacatcgagattcgttctgatgttgatgaaaacgcatcagcttctgataaaaga
agaagttacaattaccgagtagtgatggtaaagggagatactgcgctggatatgcggggg
agatgcagtgctggacaaaaggtccttgcttcccttattattcgtcttgccctggcagag
acattctgcttaaattgtggcatcttggcactagatgaaccgactacaaatctggatcga
gaaaatattgagtcccttgcacatgccctagttgagataatcaagagtcgctcacgtcag
cgtaacttccaacttctggtaatcacccatgatgaggactttgtggagctgctgggtcgt
tcagaatatgtggaacatttctacagaatcaggaagaatatggatcagtgttctgagatt
gtgaaatgcagtgttcattctcttacttcctatgttcattaa
DBGET
integrated database retrieval system
