KEGG   Latimeria chalumnae (coelacanth): 102346324
Entry
102346324         CDS       T02913                                 
Symbol
SDC4
Name
(RefSeq) syndecan 4
  KO
K16338  syndecan 4
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm04512  ECM-receptor interaction
lcm04514  Cell adhesion molecule (CAM) interaction
lcm04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102346324 (SDC4)
   04514 Cell adhesion molecule (CAM) interaction
    102346324 (SDC4)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102346324 (SDC4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:lcm00535]
    102346324 (SDC4)
Proteoglycans [BR:lcm00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   102346324 (SDC4)
SSDB
Motif
Pfam: Syndecan Glycophorin_A Protocadherin Integrin_b_cyt GP1BB_C
Other DBs
NCBI-GeneID: 102346324
NCBI-ProteinID: XP_006007744
Ensembl: ENSLACG00000010295
UniProt: H3APX5
LinkDB
Position
Un
AA seq 195 aa
MLKFWALFALMVFTLVAAESVRETETIDALGISLDGGSGSIPDDEDVDLESDSDDDDDYD
DEFSGSGDDFERKEEEEYVGITTSQWPGNDNRIPDEKSRPNEIDEDGIVAINEVALKENP
RDDLSNNIPMASRSESIFERTEILAAVIAGCSVGLLFAILLIVLLIYRMKKKDEGSYETG
KNPIYKKAPTNEFYA
NT seq 588 nt   +upstreamnt  +downstreamnt
atgttgaagttttgggcactttttgctttaatggttttcaccttagtagccgccgagtcg
gtgagagaaactgaaacaatagatgccttggggatttctttagatggaggttcaggatct
attcctgatgatgaagatgtggacttggaaagtgacagtgatgatgacgacgattatgat
gatgagttttcaggatctggagatgatttcgagcgtaaggaggaagaagaatatgtgggc
atcaccacttctcagtggcctggcaatgacaaccggatacctgatgaaaaatcaagacca
aatgaaattgacgaggatggcatagtagcaataaatgaggtggctttgaaagaaaatccc
cgtgatgatttgtctaacaacatacccatggccagtagatctgagagtatctttgaaaga
acagagatccttgcagctgtgattgctggttgttcagtgggtctgctgtttgctattctc
cttattgttctcttgatctatcgcatgaagaagaaggatgaaggcagctatgaaacagga
aagaatcctatctacaagaaagcaccaacaaatgagttttatgcataa

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