Latimeria chalumnae (coelacanth): 102346975
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Entry
102346975 CDS
T02913
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102346975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102346975
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102346975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_III
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
102346975
NCBI-ProteinID:
XP_006012929
LinkDB
All DBs
Position
Un
AA seq
546 aa
AA seq
DB search
MAVQPKEKLAVDNATENGFINFYFSMAEKPDTTVRVFDRNEFYTVHGKDAIFAAKEVFKT
NGVIKYLGSGNRKLEGVVLSKMNFESVVRDLLLVRQYRVEVYKNKTGSKTSKDNDWFLAY
KASPGNLSQFEEILFGNNDMSTAIGVVGIKLGTVDGQRLVGVGYVDSTLRKLGVCEFPDN
DQFSNLEALLVQLGPKECVLPSGDTAGEMGTLRQVVKRSGILITDKKKGDFTTKDAVQDL
NRLLKAKKGEQVTSATLPEMEKQVAMSSTSAVIKYLELLSDESNFGQFELTTFDLNQYMK
LDNAAVRALNLFQGSTEDVSSTQSLAGLLNKCKTPQGQRLLNQWIKQPLMDKNRIEERLN
LVEAFVENAELRQNLQEDLLRRFPDLNRLAKKFQRRTANLQDCYRVYQAVQQLPSVVQVL
ERYEGNHQMLVLAVFATPFNDLVCDFAKFQEMIETTLDMDQVENHEFLVKPSFDPNLTEL
REKMDELDKSMQSALSGAARELGKDLLNLLLSFIEILETSVLKNSAGAAHDVVFMIDEKV
NSLGLY
NT seq
1640 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacagcctaaagagaaattggcggtggataatgcaacagaaaatgggtttata
aacttttatttctccatggccgagaagccagatacaaccgtccgggtgttcgatagaaat
gagttttacactgtgcacgggaaggatgcaatctttgctgccaaagaggtgtttaagact
aatggggtcattaagtacttgggctcaggaaacaggaaacttgagggtgtggtgctcagt
aaaatgaactttgagagtgtcgtgagggatctgctgttggtgcgtcagtacagagttgag
gtttacaaaaacaaaactgggagtaaaacatccaaagacaatgattggttcttggcatac
aaggcctcaccaggtaacctgagccagtttgaagagattctctttgggaacaatgacatg
tccactgcgattggtgttgtgggcattaaacttggcacagtggatgggcagagacttgtt
ggagttggctatgttgattctacgctaaggaagctgggagtttgtgagtttccggataat
gaccagttctctaatctggaagctttgttggtacagcttgggcctaaggaatgtgtattg
ccaagcggggacaccgctggagaaatggggacactgagacaggtggttaagagaagtggg
attttgattacagacaaaaagaagggtgactttactaccaaagatgcagtgcaggatctg
aaccgcttgttaaaagctaaaaaaggggaacaagtgacaagtgctacactaccagaaatg
gaaaagcaggttgccatgtcatccacttctgctgtaatcaagtacttggagttgttatca
gatgaatccaactttggacagtttgaattgacgacatttgacctcaaccagtacatgaaa
ctggacaatgcagctgtccgtgcgcttaaccttttccagggttcaactgaagatgtgagc
agtacccaatcattggcagggttactaaataaatgtaaaacccctcagggacagcgtctg
ttaaaccagtggatcaaacagccattaatggacaaaaacagaattgaagaaaggttaaat
ttggtggaggcttttgtagaaaatgcagagctgaggcaaaaccttcaagaggatctgcta
cgccggtttcctgatctgaaccgcttggcaaagaaatttcagcgtcgcacagctaacctg
caggattgttaccgagtttaccaggctgtacaacaactgcccagtgtagtccaggtgctg
gaaagatatgaaggtaatcaccagatgctggtgttggctgtatttgccactcctttcaat
gatcttgtgtgtgatttcgccaagtttcaggagatgatagaaactacactggacatggat
caggtagaaaatcatgaatttctggtaaagccctcatttgaccccaacttgactgagctg
agagagaagatggatgaactggataaaagcatgcagtctgctctcagtggtgctgctcgg
gagctgggtaaggacttactaaatctcctgctatcatttattgagattctggagacatct
gtgttgaagaattctgctggggctgctcatgatgttgtgtttatgattgatgaaaaagtg
aactccctggggctgtacag
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