KEGG   Latimeria chalumnae (coelacanth): 102347146
Entry
102347146         CDS       T02913                                 
Symbol
SMU1
Name
(RefSeq) DNA replication regulator and spliceosomal factor
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcm03041]
    102347146 (SMU1)
Spliceosome [BR:lcm03041]
 Complex B
  Other components
   Complex B specific factors
    102347146 (SMU1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_Gbeta Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_NWD2_C Ge1_WD40 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_WDR75_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_IP5PC_F Beta-prop_RSE1_2nd Beta-prop_NOL10_N VPS8_N DUF7165 PROPPIN LisH LisH_PAC1 KNTC1_N LisH_WDR26
Other DBs
NCBI-GeneID: 102347146
NCBI-ProteinID: XP_014353770
Ensembl: ENSLACG00000004738
LinkDB
Position
Un
AA seq 513 aa
MSIEIESSDVIRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPARLMALLGQALKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLASGAQDGKIKVWKIQSGQCLR
RFERAHTKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQD
GHYIISASSDGTVKIWNMKTTECASTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNMISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgatagaaatcgagtcttcagacgtcattcgtctgatcatgcagtacctaaaagaa
aacaacttacatcggaccttggccacattacaggaggaaacgaccgtgtctctcaacact
gtggacagtatcgaaagctttgtagctgatataaacagtggtcactgggacaccgtgtta
caggctatccagtcacttaagcttccagacaaaacgctcattgacttgtacgaacaggtg
gtgttggagttgatagaactgcgagagttgggtgctgccaggtccctcttgaggcagact
gaccccatgatcatgttgaaacagactcagccggagcgctacattcatttggagaacctt
ctggcccgatcgtattttgatccgcgtgaggcctacccagatggcagcagtaaggagaaa
cggagagcggccattgctcaggctttggcaggagaagtcagcgtggtacctcctgcacgt
ctcatggctctcttagggcaggcgctgaagtggcagcagcatcagggactgctgcctcca
ggtatgaccatcgacttgttcagaggaaaagcagccgtcaaagacgtggaggaggagaag
ttccccacacagctgagcagacatatcaagtttggccagaagtctcacgttgagtgtgcc
cgattttctccggatggccagtatctggtgactggatctgtggacggtttcattgaagta
tggaactttactacaggaaaaatcagaaaggatctgaaataccaggctcaggataacttc
atgatgatggatgatgcggtgctctgcatgtgcttcagtcgagacactgagatgttggca
tcgggagcgcaggatgggaagatcaaggtgtggaaaattcagagcggacagtgtctgaga
aggtttgagcgtgctcacaccaaaggagttacctgcctcagtttttctaaagacagcagt
cagattctcagtgcatcttttgaccagaccatcagaattcacggtctgaagtcgggaaaa
acattgaaagaattccgtggtcactcctcgtttgtaaatgaagccacttttacgcaagat
ggacattacattattagtgcctcctctgacggcactgttaagatttggaatatgaaaacc
acagaatgtgccagcactttcaagtcgcttggcagtactgccggaaccgacatcacggtg
aacagcgttatcttgctcccaaagaatcctgaacactttgtagtgtgcaatagatcaaac
acagtggtgattatgaacatgcagggacagattgtgaggagctttagctctggtaagagg
gaaggtggtgactttgtctgctgcaccctgtctccccgcggcgaatggatctactgtgtt
ggggaagactttgtgctctactgtttcagcacggtgactggcaaactggagagaacgttg
acggttcacgagaaggatgtaattggtattgcacaccatccccatcagaacatgattagc
acctacagtgaggacggtcttttgaaactatggaagccataa

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