Latimeria chalumnae (coelacanth): 102347885
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Entry
102347885 CDS
T02913
Symbol
COL18A1
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcm04147
]
102347885 (COL18A1)
00535 Proteoglycans [BR:
lcm00535
]
102347885 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
lcm00536
]
102347885 (COL18A1)
Exosome [BR:
lcm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102347885 (COL18A1)
Proteoglycans [BR:
lcm00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102347885 (COL18A1)
Glycosaminoglycan binding proteins [BR:
lcm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102347885 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
Fz
DUF959
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102347885
NCBI-ProteinID:
XP_014344424
LinkDB
All DBs
Position
Un
AA seq
1859 aa
AA seq
DB search
MAVIGCLSAVLLGLAVCLSCADGQFFNWLWGGGSQVTTSSPPVVESMLEVGTPHPAGPEV
GVGTVGAEESPTVPTGRLGEGGFWSYFGWKKQERTTRSPAMTSALPTPEKDKNIAGVGEQ
ILNVAESIRNLVHRWDQQPTTTSTVGDYSVSPNTTSLRSGPETSKVVGGSPAEEGVSTSR
SGKFGASSEESVLKPSAEGETTKPTLVRGTPQPGSSSPPVPFTGSLPNDSVTVVGSRPLE
SREQVGSPDPRNTASFHSSDASSEISVAPTAWVWQELAENAIVRDGNQSEVAGSSNFGLS
QNALDIAHAVADHNDTRDLSNHTNSQLQPSFNTSKHHGIAMAELSRNESGLLSNTTVPDL
VVGFTVLNDSEQIDFDLLITAEKSDPIIRSKDGSASIVVGMSLPASHCVPLPASLPFCAG
LGVKSIALPNYLNQSGVVEIAETLREWAGLLGSHCHCRLEWFFCLLLAPRCNASAPPCRG
FCENLRDDCWMQLDAGRLPVSCDLLPEEEVADGYSCVSINFTKDEDGSRAEVTLLQLIGD
PPPDEITKVYDPDNNPGYVFGPDANTGQVARYHLPNPFHRDFSLLFHVQPTTSQPGVLFA
ITDASQSIIYVGVKLSAAQGRSQSIIFFYTEPGSQASYAAATFNVGSMVNQWTRFAISVE
DEEVVLYLNCEEFQRVRFERSPDDMELENASGLFVAQAGGADPDKFVGVIADLKVKGDPM
AAELYCVEEEDDSDMISGDFGSGVTVGRGDADMVTVSLRPIEQPPVVRPPTTSDALIWTD
MDSRSTEKTTQGAGGSKGAKGDQGEKGERGDRGPTGLKGESGTATSTGTSGDRGPKGEKG
EHGLKGNAGFGYPGPKGQKGEPGIQGPPGPAGPSGPSATVVRHKDGSVVEQVTGARGPPG
PRGPQGPQGNPGADGEPGDPGEDGKAGEIGPQGFPGAPGESGLKGEKGDPGVGQPGLRGP
PGPPGPPGPLVHGSRTDKLTFIDMEGSGFGGDLESIQGPPGLPGPPGAPGLPGLPGRPGQ
FGRNTSALPGPPGLPGVNGRDGSPGLPGPPGPPGQPGRDGEPGQPGLPGKPGEPGSLGLP
GPVGIKGEIGDPGLPGPSGETGLAGLPGPMGPRGLPGPPGLPGPPGLSSLTPGFGDMEDV
GGSGVSFQPGVPGPRGSEGPQGPPGFPGLQGPKGETGHHGVPGTPGEKGEKGTAGLDGLP
GLDGFPGDQGPKGDRGDPGEKGEPGRDGVGLPGPPGPPGQIIYSTGDNRESYRERAGFPG
PMGPKGEKGESGILGQRGYQGQKGEPGAIISSDGAVLHSFGDASKGEKGEPGARGPLGPV
GLPSRPGQKGEIGFPGRPGRPGINGLKGEKGEPGDGSAGFGYRGPPGVPGPPGPPGLPGR
AVSVYGNDVFGEAGAPNIPGLRGAKGDRGFPGYPGEKGDRGESGPPGPPGAFPYDLALFG
TGGRGEKGDQGLKGERGESGAGFFGSGTPGSQGPPGQPGRPGLQVSLWGALVPKKKKIWL
LHSHPGGDRTLKVCAVSLLITLSISIPGPPGPPGPPGPPGHTSGVMVLQTYQIMVSNARS
LREGTLVFVLERGDLYIKVRDGFRQIYLGEYVPVTGGVQENEVAAVQPPPVVHYPQGNVV
LTGVGFLEEGDTEPQRPTTAAPWRYPEPSDPQAQPQPRDPSATNPVYQPRREVAPPAWYP
SPPDRRAESQPSAGHSHTGAGPALHLIALNTPLTGDMRGIRGVDFQCFQQARSVGLMGTF
RAFLSSRLQDLYSIVRRADRTNVPIVNLRSLITAYWRGRLTFQMCIAFRHQKMVWHGSDP
KGRRLPESYCETWRAGQQAALGQASSLFSGKLLEQRPASCSSSFIVLCIENSYLAPSKK
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgattgggtgtctgtctgcggtgctgctgggcctggctgtctgtctgtcctgc
gccgatggtcagtttttcaattggctttggggcggtgggagtcaggtgactaccagcagc
ccccctgttgtggagagcatgctggaagtggggaccccgcacccagccggacctgaggtt
ggggttggaacggttggcgcagaggagagccccacagtccccactggccggctgggagaa
ggtggcttttggagttactttggttggaaaaagcaggagaggacaacgcgttcaccagcc
atgacatcggcactgcccacaccagaaaaggacaagaacatagctggagttggcgaacag
atactgaacgtggcagaaagcatacgcaacttggtccacaggtgggatcaacagcctacc
acaacttccaccgtaggagactattctgtttctcctaatacaacgtccctgcgtagtggt
ccagagacctccaaagtggtaggaggcagtccagccgaagaaggggtctccacatcacgt
tcgggcaaattcggggccagcagcgaagaatcagtcttgaaaccttctgccgagggagag
acgacaaagcccaccttggtgcgcgggacccctcaaccaggtagcagctctccaccagtc
cccttcaccgggagtttaccaaatgattcggttacggtagttggctcacgcccgttggaa
agccgggaacaagtcggatccccagatcctaggaatactgcatctttccacagcagcgat
gcatccagtgagatttcagtagccccaacagcttgggtttggcaagagctggcagagaat
gcaattgtgcgtgatgggaaccaatcagaggtggcgggctcttctaatttcgggctatcc
cagaatgccttagacatcgctcatgctgtggctgatcataatgatacacgtgacctgagc
aatcataccaacagccaattgcagccaagcttcaacacctctaagcatcatgggatagct
atggctgagctaagtagaaatgagagtggtttgctttctaacacgactgtgcctgatttg
gtggttgggtttactgttcttaatgattctgaacaaattgactttgatttactaatcact
gctgaaaaatcagacccaatcattcgatctaaagatggaagcgcttccattgtggttgga
atgtcgctgcccgcctcccactgcgtgcccctgccggcgagcttgcccttttgtgccggc
ctgggtgtgaaaagcattgccctgcccaactacttgaaccagagcggcgtggtggaaata
gcggagacgctgcgcgaatgggcagggctgctgggctcgcactgccactgccggctggag
tggtttttctgcttgctcctggcaccgcggtgcaatgcttcggccccaccgtgccgtggg
ttctgcgagaacctacgggatgactgctggatgcaattggatgcgggccgcctgccggtg
tcatgtgacttgctcccggaggaggaggttgctgatgggtattcgtgcgtgtcaattaat
tttaccaaagatgaggatggctccagggcagaggtaaccctattacagctgattggagac
cccccaccagatgagatcaccaaggtttatgaccctgacaacaaccccggatatgtcttt
ggaccagacgccaacaccggccaggtggcccgctaccacctgcccaaccctttccaccgg
gacttctccctcctcttccacgtgcagcccaccaccagccagcccggtgtcctctttgcc
atcacggacgcctcgcaaagcatcatttacgtgggcgtgaagctctctgccgcccagggc
aggagtcagagcataatcttcttctacacagagcccggttcccaggcctcctacgccgct
gccactttcaacgtgggctctatggtcaaccagtggacacgtttcgccatcagcgtggaa
gacgaggaagtggtcctgtacctgaactgtgaagaattccagagggtccgttttgagaga
tcccctgacgacatggagctggagaacgcatccgggctctttgttgcccaggctggaggt
gctgatccagataagtttgtgggtgtgatagcagatttgaaggtgaagggggacccgatg
gcggctgagctctactgtgttgaagaggaagatgactccgacatgatctcgggagatttt
ggaagtggagttacagtcggtcgaggagatgcagacatggtgactgtgtctctgagaccc
atagagcaaccccccgtggtgagacctcctaccacatccgatgctttgatctggacagac
atggattcccgttcaactgagaaaaccacacaaggtgcaggcggttcaaaaggtgcgaaa
ggagaccagggggaaaaaggtgagaggggagaccgcgggccaacaggtctgaaaggagag
agtggaacggcgaccagtactgggaccagtggagacagaggcccaaagggtgaaaaggga
gagcacgggctaaagggaaatgctggattcggatacccgggcccaaaggggcagaagggg
gagcccgggatccagggaccacctggccctgcaggcccctcgggtccttccgccactgtg
gtacgacacaaagacggctcagttgtggagcaagtcacaggcgctcggggcccaccgggt
ccacggggaccccaaggcccacagggaaaccctggagctgacggagagccgggtgatcca
ggtgaagacggcaaagcaggtgaaattggtcctcagggtttccccggtgctccaggtgaa
tcaggcctcaagggagagaagggtgatccaggtgtgggacaaccaggactaagaggaccc
ccagggcctccaggaccccccggtccccttgtacatggttctaggacggacaagttgaca
tttattgatatggagggttcaggattcggaggcgatctggaaagcatacagggacctccg
gggttaccaggcccacctggagcccctgggttgccaggccttcctggaagaccaggccag
tttggaaggaacacgtctgcgctcccagggccacccggcctgccaggtgttaacgggaga
gatggctcccctggactgccaggacctcctggtcctccaggccaaccagggagggatgga
gaaccaggccagccggggcttccaggaaaaccaggtgagccaggatctcttgggcttcca
ggacctgttggaataaagggagagatcggagaccctggcttgccggggccctctggcgaa
acaggattggctggccttcccggaccgatgggaccccgcggacttcctggaccacctggg
ctgcctggaccacctgggctcagtagcctcacgcctggattcggtgacatggaggatgta
ggaggctctggagtgtcattccagccgggagttccgggccccagaggatccgaagggccc
cagggcccaccaggatttcccggacttcagggaccaaagggggagactggtcaccatggc
gttcctggaacaccaggtgaaaagggagagaagggaactgctggactggatggccttcct
ggattggacggcttccccggagatcagggaccaaagggtgacagaggagatccaggtgaa
aaaggtgaacccggtcgagatggggtggggctgcctggcccacctggtcctccaggacag
atcatctactcaacaggagacaacagagaaagctatcgggaaagagcaggcttcccaggc
cccatgggacctaaaggggagaaaggagagtctggaatcctaggacagcggggttatcag
ggtcagaagggagagcctggagccatcataagctctgatggggcagttctacatagcttt
ggtgatgcatccaaaggagaaaagggagaacctggagctcgagggccccttgggccagtg
ggtctaccgagtcgtcctggacagaaaggagagattggctttcctggcagacctggtcgc
cctggcattaacggactgaagggtgagaagggagagcctggagacggcagcgctggattt
ggctataggggtccaccaggtgtcccaggccccccaggtccgccgggtctacctggacga
gcagtatcagtctatgggaatgatgtttttggagaggctggtgctcccaatataccagga
ttacgtggtgccaaaggtgaccgagggtttccaggctatccgggtgagaagggagacagg
ggggaatcaggaccccccggaccaccaggcgctttcccctatgaccttgctctgtttggc
actggtggcaggggggagaaaggggaccagggcctgaaaggagagagaggagaatccggg
gctggatttttcggttctggtacacctggatctcagggacctccggggcaaccaggccgg
cctggactccaggtaagtttgtggggtgcgctggtaccaaaaaaaaaaaaaatctggttg
cttcattcccaccccggaggtgaccgcaccttaaaggtttgtgcagtatctctgttaatc
actttgagtataagtattcctggtccaccagggcccccaggaccaccgggaccaccagga
cacacttcaggagtgatggtattgcagacgtaccagataatggtgtcaaatgcccgtagc
ctgagggaggggacgctggtgtttgttctcgagaggggtgacctctacatcaaagttcga
gacggcttccgacaaatctacctgggagagtatgttccagtcacgggcggagttcaggaa
aacgaggtcgctgccgtgcagccccctcccgtggtccattatcctcagggcaacgtggtg
ctgacgggggtgggattcctggaggagggtgacacggagccccagcggcccaccaccgcg
gccccgtggagatacccggagccgtcagatccccaagcccagcctcagccaagagacccg
tctgcaaccaatcctgtctaccagccccgccgagaagtcgcacccccagcctggtatccc
agtccaccagaccgcagagccgagagccagccctccgctggtcactcacacaccggggct
ggacctgcactgcacctgattgccttaaataccccactaactggtgacatgcgggggatc
cgtggagtggacttccagtgcttccagcaagcccgctcagttggcctgatgggcaccttc
cgcgccttcctgtcctcccgacttcaggacctgtacagcattgtccgcagagctgaccgg
accaacgtgcccatcgtcaacctcaggtctttaattactgcttactggaggggacgtttg
acctttcaaatgtgcattgctttcaggcatcagaagatggtttggcacggctccgacccg
aagggccgccgcctgcccgaaagctactgtgagacgtggagagcagggcagcaagcggca
ctgggacaggcttcctccctcttcagcggcaaacttctggaacagaggcccgccagctgc
agcagctccttcattgtcctctgcatcgaaaacagctacctggcaccctccaagaaataa
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integrated database retrieval system
