Latimeria chalumnae (coelacanth): 102348279
Help
Entry
102348279 CDS
T02913
Symbol
HIF1A
Name
(RefSeq) hypoxia inducible factor 1 alpha subunit
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04137
Mitophagy - animal
lcm04140
Autophagy - animal
lcm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102348279 (HIF1A)
04137 Mitophagy - animal
102348279 (HIF1A)
04148 Efferocytosis
102348279 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcm03000
]
102348279 (HIF1A)
Transcription factors [BR:
lcm03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
102348279 (HIF1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
NinG
Motif
Other DBs
NCBI-GeneID:
102348279
NCBI-ProteinID:
XP_005986474
Ensembl:
ENSLACG00000018272
UniProt:
H3BFX9
LinkDB
All DBs
Position
Un
AA seq
808 aa
AA seq
DB search
MEGLIVTDKKRVSSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHNVTSHLDKASIMR
LTISYLRMRKLLGAGEFEAEADLDKQLNSCYLKALDGFVMVLTEDGDIIYLSENVNKCMG
LTQFELTGHSVFDFTHPCDHEELREMLTHRNSPVKKSKEQHTERNFFLRMKCTLTSRGRT
VNIKSATWKVLQCTGHIQVYETCKGKTHCGYQEPPMTCLVLICEPIPHPSNIEVPLDSKT
FLSRHTLDMKFSYCDERITELIGYQPEELLGRSVYVLYYALDSDHLTKTHHDLFTKGQAT
SGQYRMLAKEGGYVWVETQATVIYNTKNSQPQCVVCVNYVLSGVVEKELVFSIGQAKKTV
ESVESPDAKITQLFSKIKPAEDSNSLFDQLKEEPEALTLLAPAAGDTIISLDFSKSDSEV
QQFDEVPLYNDVMLPSSSENLQNLEMSPLPASETTEALCSSTDPALNMEVVTKLEPTPEP
LDLSFSVPQTQDRPSTPSEHHTSQSTPQPKSPPDYCFEVDDDIVSEFKLDLVEKLFAIDT
EPKSFFSTQEAEELDLEMLAPYIPMDDDFQLRSFDQLSPLQSGSESPQNVGSVTNLFHQA
QAPVSSSEKSTSATKEITEEIKTVKSIQSPSHINSAPASPYSGNRSRTASPVRTGVQGSG
LAEPADRSCPGTPNVSPVTLNKRTITLNKELNPLTILLHNVQRKRKLENEASLFQAVGIE
TLFQDADSSGSNAGCKRTKGIQSSPPNGPQQKTLILLSTDLASRLLERSEDNRLPQLTRY
DCEVNAPIQDSRNLLQGEELLRALDQIN
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggaggggctgatcgtcaccgacaagaaacgagttagctcagagcgcaggaaggaaaaa
tccagagatgcagctagatgccggagaagcaaagagtcagaagtcttctacgaactggct
caccagttgccacttcctcataatgtcacctctcatttggacaaagcctctataatgaga
ttgaccatcagctatctgcgtatgaggaaactgcttggtgctggagaatttgaggcagaa
gctgacctggacaagcagctgaatagctgttatttgaaagccttggatggatttgttatg
gtacttacagaagacggggatatcatttacttgtctgagaatgtcaacaagtgcatggga
cttactcagtttgagttgactgggcacagtgtttttgattttacacacccctgtgaccat
gaagagttaagagaaatgctcacacacagaaacagtccagtaaaaaaaagcaaagagcag
catacagaacgcaatttctttcttcgaatgaagtgcaccctgactagtagaggccggact
gtcaacattaagtctgctacgtggaaggtgctgcagtgtacgggtcacattcaagtatat
gagacttgtaaggggaaaacccactgtgggtatcaggagcctcccatgacctgtctggtg
ttaatttgtgaacccatcccacatccatccaacattgaggttccgttggacagcaaaacc
ttcctgagtcgtcatacgttggacatgaaattttcctactgtgatgagagaattacagag
ttaataggataccaaccagaagaactgctgggtcgttcagtctatgtattatattatgct
ctggactcagatcacttgactaaaactcaccatgacttgttcactaagggccaggctacc
agtgggcagtacaggatgctggctaaggaaggtggatatgtctgggttgaaactcaagct
acagtgatctacaataccaaaaattcccagccgcagtgtgtcgtctgtgtcaattacgtc
ctgagcggtgttgtggagaaagagttggtcttctcaattgggcaggccaagaaaacagtg
gagtctgttgagtcaccagacgctaagataactcagcttttcagcaagatcaaaccagca
gaagattccaacagcctctttgaccagctgaaggaagaaccagaagcattgactttgttg
gcacctgctgctggagacactatcatctcactggatttcagcaaatctgactctgaggtt
cagcagtttgatgaagttccattgtataatgatgtaatgctgccgtcatccagtgaaaat
ctgcaaaatttagagatgtctccgcttcctgcttctgaaactaccgaggcactgtgtagt
agtacggatccagccctaaacatggaagttgtgacaaaattagagccaaccccagagcca
ctggacctgtcgttttctgttcctcagacacaagacagaccgagcaccccctctgaacac
cacactagccaaagtacaccacagccaaagagcccacctgactactgctttgaggttgac
gacgatattgtcagtgagttcaagctggatctggttgagaaactttttgccattgacaca
gaaccaaagagctttttctctactcaggaggctgaagagctggacttagagatgttggct
ccttacatcccaatggatgacgatttccagttacgttcattcgaccaactctctcctctg
cagagtggctctgaaagcccacaaaacgtgggcagtgtgaccaacctatttcaccaggca
caagcaccagtttcttcctctgagaaaagcacatcggcaacaaaagaaataacagaagag
attaagaccgtgaaatcgatacagtctcccagtcacataaacagtgccccggcatcacct
tacagtggtaatagaagcagaacggcttcccctgtccgaacaggtgttcagggaagtgga
ttagcagaaccagcagatagatcctgcccaggaacacctaatgtgtcaccagtcactctt
aacaaaagaaccatcactctgaacaaggaattaaatcctctgacaatacttttgcataat
gtacagagaaaacgaaaactggagaatgaagcttccctgttccaagctgttggaattgag
accttgtttcaggatgcagatagttctgggtcaaatgcaggttgtaaacgcacaaaagga
atccagtctagtcccccaaatggccctcaacagaagacactcatattattgtctacagac
ctggcgagtagactccttgagcgatcagaggataataggctgcctcagcttactcgctac
gactgtgaagtaaatgctccgatacaagacagcaggaacctgctgcagggggaagaactt
cttcgagctcttgatcaaatcaactga
DBGET
integrated database retrieval system
