Latimeria chalumnae (coelacanth): 102348684
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Entry
102348684 CDS
T02913
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm02010
ABC transporters
lcm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
102348684
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102348684
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcm02000
]
102348684
Transporters [BR:
lcm02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
102348684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_15
AAA_23
MukB
ABC2_membrane_2
Motif
Other DBs
NCBI-GeneID:
102348684
NCBI-ProteinID:
XP_014349979
LinkDB
All DBs
Position
Un
AA seq
1952 aa
AA seq
DB search
MALAPILSSSTERNSDDPATQLFDSLDFFLCGSAQGQEKKNKSSNGKELTTTVQENNITT
GENGSQFTTGNATGDFCQSLISTLENSAFLQILWNIFRPLLMGKILYTPDNPATRRIVTE
ANGTFRGLGDLKEFGEAWEEYGPIIWDFLQNSAQVNGIRAALKNPIVAAVVDDSLNGTGW
SAEHIANFLYNGPPENRHPDMPAYDWRDVYNYTTSAIQKLTQFLGCLNLDKFEPASNEGD
LIRRSLQLIQDDMFLSGIIFQDFDPDASEVPSHVKYKIRMDIDEVEHTDKIKDRLWAPGA
RDNYYLDMRYISGGFAYLQDMMDQGIIQVHTNSSQPLGVFVQQMPYPCYVSDKILVKLTS
SLPLYMTLAWIYSVAMIVKGIVYEKEARLKEMVRMMGLTYSTYWFSWFISSCIPLCISAC
FLTLILKFGNVLLYSNPLVIFIFLVIFCIATIMECFLISTLFSKANLAAACGGIIYFVLY
LPYILYSVWQDYLGFNIKIILSLLSTVAFAFGCENLTHYEQQGTGIQWNNIARTPMEGEH
YSLLVSMLLMLFDAFLYWTLTWYIENVFPGQYGIPRPWYFIFTTTYWCGKPVKIETDAVA
METLYNNNNNNNNNGNTEAEPSHLKQGVSIRNLVKIYKTGKKLAVDGLSVNFYENQVTSF
LGHNGAGKTTTMSILTGLFPPTSGTALIYGKDIRTEIDSIRKNMGMCPQHNVLFDQLTVE
EHIYFYARLKGKSTKEVKEEIDFMIEDVGLPHKRKDMVKNLSGGMQRKLSVAIAFVGGSK
LVILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTHHMDEADILGDRVAIISHGKLCCC
GSSMFLKKCFGSGYYLTLVKSGTVHSNSFKEYTKLKQNLDHVSLSSSADEGIGSEGRSNE
DIPVTADVEAITYLIQKHVPEAEFLEDIGQEITYVLPYEGAQNGSFAQLFKDLDVLLPNL
GVSSYGISDTTLEEIFLKVAEDTGVDREISAKKKSQTKDWKKSSREMRRMSISSVTSQPK
LMKGHNDSILNLDAENAKSFDGSEGKGSYAITGWKLIHRQFWALFIKRFHHARRSRKGFI
AQVVLPAVFVCLSLIFALTTPPFTEYPSLELHHWMYGPLQRTFFSNDAPDITQVSDVVDS
LTNNPGMGTRCMKNDPVMKFPCASNGTNWYTPSVSSAVSNIFVNGNWSMEDPSPSCQCST
PKQTAMLPDCPPGAGGLPPQERIQNTTDILQNMTGRNVTDYLLKTYQNFYKVRYGGISVG
EKNSQVRLNQTEIAALVQQLKSMLNVSKGDEIDLMLKKVEELFLKLGTKDNVKIWFYNKG
WHAMVSFINVASNAILRGNLPAGKDPRDYGITTYNHPLNLTKESLTDMAFATTSSDVIVA
ICVIFAMSFIPASFVLFLIQERVSKAKHLQFVSGVNPVVYWVANFAWDMCNYIVPCIIVI
IIFICFQQESYVSRPNLPVLILLFVLYGWSITPLMYPASFVFSVPSTAYVVLTCVNLFIG
INGSVATFIMDYVSDENTTKINDLFKRILLIFPHFCLGRGLIDMSGNHQAIAARFLRFGE
DRFQNPFNWDIVGRNLFAMFIEGIIFFIFTLLLQYKFFIKPRPVKLEVLSITDEDEDVAF
ERNRILNNSEQLNLLKICELTKVYRKKKKPAVNKICVGVPPAECFGLLGINGAGKTTTFK
MLTGDIAVSSGDAFINGYSILTQMKEVHQNMGYCPQFDAIDDLLSGVEHLELYARLRGVP
EDEIKKVAEWGINKLGLIKYGSKSAGTYSGGNKRKLSTAMALIGCPPIVFLDEPTTGMDP
KARRFLWNCILSIIKEGRSVILTSHSMEECEALCTRMAIMVNGEFKCLGSIQHLKNRFGD
GYTVMVRVSGSPPDLKPVQDFIESFFSGSTLKEKHHNTLQYQLSSSENSLSKIFSAFTQN
KDRLKIEDYSVSQTTLDQVFVNFAKQQSEEHV
NT seq
5859 nt
NT seq
+upstream
nt +downstream
nt
atggctttagcacctattcttagttcttcaactgaaagaaactctgatgatcctgctacg
cagttatttgactccctggatttttttctgtgtggtagtgctcaagggcaagaaaagaaa
aataaatcctctaatggcaaagaacttactactacggtacaggagaacaatattactaca
ggggaaaatggctcccagttcactacaggcaatgcaactggagatttctgccagtctctt
atttctaccttggagaattcagcttttctccagatcctgtggaatatttttcgtcctctt
cttatgggaaagatcctttataccccagataatcctgcaacgagacgcattgtgactgag
gcaaatggtacttttagaggactgggagacctaaaggaatttggcgaagcctgggaagaa
tatggcccaataatttgggattttttacaaaatagcgctcaagttaatggaataagggct
gctctgaagaatccaatagtggctgcagtagttgatgatagccttaatggtactggatgg
agtgctgaacacattgcaaactttttatacaatggaccaccagagaatcgccatcctgac
atgccagcatatgactggagagatgtatacaactatactactagtgcaatacaaaaacta
acacagttccttgggtgcttaaacctggacaagtttgaacctgcttccaatgaaggagat
ttgattcgcagatcactacagctaattcaggatgatatgtttttatccggaataattttc
caggattttgaccctgatgctagtgaggttccttctcatgtgaagtataaaattcgtatg
gacattgatgaagttgaacacaccgataagatcaaagacaggttatgggcacctggcgct
cgagacaactactatttagacatgcgatacatctcaggtggttttgcctacctccaagac
atgatggatcaaggcattattcaagtacataccaacagctctcagccgcttggagtattc
gttcagcaaatgccttatccctgttatgtgagcgataagattttggtcaagctcactagc
tcactaccactctacatgaccctagcatggatttattcggtagccatgattgtcaaaggt
atagtgtatgagaaagaagctcgcctgaaagaaatggtgagaatgatgggattgacctac
agtacatactggtttagctggtttatcagcagctgcatcccactttgcatcagtgcctgc
tttcttactcttatactcaagtttggaaatgttctgctctacagtaaccctttggtaatc
ttcatctttctggtgatattttgcattgccaccataatggagtgttttctcatcagtacc
ttattctcaaaagccaatctagcagctgcctgtggtggaataatttactttgtactgtac
ctgccatatatcctgtactctgtttggcaggactaccttgggttcaatataaaaattatt
ttgagcctcttgtcaacagtagcctttgcttttggttgtgaaaacttaacccactatgaa
caacaagggacgggcattcagtggaataacattgctagaactccaatggaaggagagcac
tatagccttctagtttcaatgcttttgatgctctttgatgctttcttgtactggactttg
acatggtatatcgagaatgtttttccaggccaatatggaattccaaggccctggtacttt
atctttaccacaacttactggtgtgggaaacctgtgaagattgaaactgatgctgttgca
atggagactctgtacaacaacaacaacaacaacaacaacaacggtaacacggaagcagaa
ccctcccatttaaaacaaggtgtatctatcagaaacttggtaaaaatctacaaaactgga
aaaaagttagcagtggatgggcttagtgtaaacttctatgaaaatcaggttacatcattt
cttgggcataacggagctggaaaaaccactacaatgtcaattttgacaggacttttccca
cctacgtctggtactgcacttatatatggaaaagatattagaactgaaattgattctatt
agaaaaaacatgggaatgtgtccacaacacaatgtgctttttgatcagcttactgtagaa
gaacacatttatttttatgcccgtttgaagggaaagagcacaaaggaagtgaaggaagaa
attgactttatgattgaagatgttggattgccacacaaacgtaaagacatggtcaaaaat
ctctcgggtggaatgcagagaaagctgtctgtagcaattgcctttgttggaggctccaaa
cttgttatcttagacgaacccacagctggtgtagatccatatgctagaagaggaatatgg
gaacttctactcaaatacaagcaagggcgtaccattattctgtctacccatcatatggat
gaagcagatatccttggagatcgtgttgctataatttcacatggcaagttatgctgttgc
ggttcctccatgtttttgaagaagtgctttggaagtggttattatctcacacttgtaaaa
tcaggaacggttcattctaattcctttaaggaatacaccaagttaaaacagaatctggat
catgtgtctctttctagcagtgcagatgagggcattggtagtgaaggtagaagtaatgaa
gatatacctgtaacagcagatgtagaagccattacttacctgattcagaaacatgtccct
gaggctgaatttttagaggatattggtcaagaaattacatatgtattgccatatgaagga
gcacagaatggttcctttgcacagctgtttaaggatctggatgttctacttcccaaccta
ggtgtttccagttatggcatttcagataccaccctggaagagatttttttgaaagtagca
gaagatactggtgtggatagagagatatcagctaagaaaaaatcacagacaaaagactgg
aagaaaagttcaagggaaatgagacggatgagcatctccagtgtcacaagccaaccgaaa
ttaatgaaaggacataatgattctattctgaatttagatgcagagaatgcaaaaagcttt
gatggttcagaaggaaagggtagttatgcgatcacaggctggaaactaattcacagacag
ttctgggcgcttttcataaagagatttcatcatgctcgtagaagtcgcaaagggtttatt
gctcaggtagtactccctgctgtgtttgtttgcttgtctttgatattcgctttgactact
cctccatttacggagtatcctagtctggagcttcatcattggatgtatggaccactgcag
cgtactttcttcagcaatgatgctcctgatattactcaagtgtcagatgtggtagattca
ctgacgaataatcctggaatgggaacacgctgtatgaaaaatgatccagtaatgaaattc
ccatgtgccagcaatgggacaaactggtacactccatcagtatcttcagctgtctcaaat
atatttgtaaatggtaattggagtatggaagatccctccccttcttgtcagtgcagcaca
ccaaaacagacagccatgttgccggactgtcctcctggggctggagggctgcctcctcaa
gagagaattcaaaataccacagacatcttacagaacatgacaggaagaaatgtcactgat
tacctactgaaaacttatcaaaatttctacaaagtcaggtatggagggatttcagtagga
gagaagaactcgcaagttcgactgaaccagacagaaattgctgctttagtccagcagctc
aaatctatgctcaacgtttctaagggagatgaaattgacctaatgctgaagaaagtggaa
gagctcttcctaaagcttggtacgaaagacaatgtaaagatatggttttacaacaaagga
tggcatgcaatggtttcctttatcaatgttgctagtaatgccattctccgtggcaattta
cctgctggcaaggatcccagagattatggaatcacaacctacaatcatccactgaatcta
acaaaggagtcgctaacagacatggcctttgcaaccacctcttcagacgtgatcgtagcc
atctgtgtgatatttgccatgtcatttatccctgccagctttgtactatttctgatccag
gagagggtttccaaggctaagcacctgcaatttgtcagtggggtgaacccagtagtttac
tgggtagctaattttgcatgggatatgtgcaactatattgtcccatgtatcattgtgatc
ataatcttcatctgctttcaacaagaatcttatgtgtcacgaccaaacctgccagtgctg
attcttctatttgtgctttatggatggtccatcacacctcttatgtacccagcgtctttt
gtgtttagtgtgcccagcacagcctatgtcgtgctgacctgtgttaacctgtttattggg
atcaatggtagtgtggccacctttattatggattacgtcagtgatgagaacacaacaaaa
ataaacgatcttttcaaaagaattttactgatttttccacatttctgtcttggaagagga
cttattgatatgtcaggaaaccaccaggctattgctgccaggttcttaagatttggtgaa
gaccgttttcagaacccttttaactgggacatagtgggcagaaacctatttgcaatgttt
attgagggcataatcttctttattttcacccttctcttacaatataagttcttcatcaaa
ccaagaccagtaaaactggaagtgctttccatcactgatgaagatgaagatgttgctttt
gagcgtaacagaattctgaataatagtgaacagcttaacctgctgaaaatatgtgaactt
acaaaggtgtatagaaagaagaagaagcctgctgtcaataaaatttgtgtaggagttcct
ccagctgagtgttttggtctactgggaataaatggagctggaaaaacaaccaccttcaaa
atgttgacaggagacatagctgtttcaagtggagatgcgttcataaatggatacagcatt
ttgactcagatgaaggaggtccatcagaacatgggctactgtcctcagtttgatgccatt
gatgaccttttgagtggagttgaacatcttgagctttatgctcgccttcggggggtccct
gaagatgagataaagaaggtggctgaatggggaatcaataagttgggtcttatcaagtat
ggcagtaaatcagcaggaacctacagtggaggaaataaacgcaagttgtccacagccatg
gctcttattggatgtccacctatagttttcttggatgaaccaacaacaggaatggacccc
aaagcccgacgttttctatggaactgcattcttagcatcatcaaggaaggtcgatctgtc
attttaacatcacacagcatggaggaatgtgaggctctttgtacgagaatggctataatg
gtgaatggagagttcaaatgccttggcagtatccagcacttaaagaacagatttggagac
ggctacacggttatggtgagagtgagtggctcccctccagacttgaagcctgttcaggac
tttattgaatcttttttctctggcagcacactgaaggagaagcaccacaatactttgcaa
taccaactgtcatcttctgagaactcactgtcaaaaatttttagtgccttcacccaaaac
aaagatagactaaaaattgaagactattctgtgtcacaaacaactcttgatcaggtgttt
gtcaatttcgctaaacaacagagtgaagagcacgtgtga
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