KEGG   Latimeria chalumnae (coelacanth): 102348909
Entry
102348909         CDS       T02913                                 
Symbol
MDC1
Name
(RefSeq) mediator of DNA damage checkpoint 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lcm03400]
    102348909 (MDC1)
DNA repair and recombination proteins [BR:lcm03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    102348909 (MDC1)
SSDB
Motif
Pfam: BRCT_2 BRCT RTT107_BRCT_5 FHA PTCB-BRCT Yop-YscD_cpl
Other DBs
NCBI-GeneID: 102348909
NCBI-ProteinID: XP_014345225
LinkDB
Position
Un
AA seq 2083 aa
MMEQTQLLEDPSLLEEESPEVIASEVASQEPVGKLCVFKCTYCPEKEFLLYRGENVIGRH
KSCRIHIPATSVSKKHAVIEVEADSHLIHDCGSLNKTRRRKMVLKPYVRYSLEDRDLLMF
ADVACQYTVLPQPIRIRSLEAPAIQELPVVTSPEVRVDEQRQGVISQEVPVSRAKQDVTS
QEAPVGREKQEAASRETAAGDPSSDSDDDSLLVPATQENPVRQLALEKTPAPSKRCLVTP
LVKDSDDEENDGGRYRNLQRHQQSSDFVDAHGERSRLSFLSPSTTVPESDEEESDPFTPA
IKVSAVQIHYDSNTVTEDEQVGTEPSRASGKQKGAPKSSQNGAAETSAHSAQGSGQEVNK
AVAAGQAATNSDTDVDEDIAPKDVEQRVSSAQPMAVSAGEDGQRSGECHQDVANGNVPAV
LAEGGSRVVDKNKEVPSASSGKDSDASCQGNQSARDSGFVGGPVEHQLPNFHLDSDTDTE
DGVEKSALGPNLNARTDFHMDSDTDVEEDGDEVKKSDSEPVSGARADLHMDSDTDVEEDG
DEVKKSDSKPVLGTRTDLHVDSDTDAEEDGDEVKKSGNEPLLGARCDLEVDSDTDIEDNS
EPPTLRAEALHRQDSSDTDTDATVQPTQCYLATVSSSEEAEMQPAEVTAGSGVEEEEEEA
TQFFIPQTDPFKKPFSLSSSRRSQSTQAKVTAPEREEDLDDDHFVIAETQSFCTDNDADV
TNVSDKSGLEAYEEEATQAYAVDLPQSPETEAGASGKQEEEDTQPVPCTKTSTSPHLEQE
EATQLYDVEQPVTSETMPMSRLASTDRSWKGEMHAVANSTNFAPETAALPGTAAVTAAGS
AVDISINDTQPLAGTINQAPKGLAPVIHTQEHKRTDASTEGTQPVDSVQTNKTALSGGSR
DYSASHEAGESGAEGTSTVEGYAADDDTQPVSQLQKNKKLNLEVHPVEDDTQPEDKEPVR
ETHSAEVDTQPVGQLQESEEPTVDTHPEEDSTQLIAQSQEPEEFAMDVNPAEDDTQPVGQ
LQEAKELVRDVHIEESDTQPVGFLFSSSRRTSQEEQPTMDISATGSDTQPIVDSPTSGGC
TAKSHLAEDLQLQLSEDATQPILPIDLSTNLSRESAKRATCTDVEVGKSSATEIRIGMDL
PEVGDEDETQAEVPLCSAGLGDSEEPTEVTNEEVLLDEANVQPAKAGMEASASTVALSEN
DTQPIEVAPETLSVPQLKPGPAEVENILQPSLKKDKKGEGAKALLGRRGRSKKEENKEVE
AGRRTEKSSSGSTQLAPEKVPADESGGTAKEDLAVEGRGRRKPRARKSTAAQPDGDGGGG
PPSRNSSRRSNPPLEDSAEVHEDESRKGRKRGWVGRGRRRASSEGEWAAALLSDTAGDQV
VVEGAQGSSAEKVATSKLVESSKTGATAEPTSTRRGKKRGKALHKPSTVTVVPKQPEEEA
TASGISSATIQKETRTRRRSASLTEPLEADDGRGLASERSKGRGKKAAAESSAEKDQGLT
AGNEIAVPSRAGRARGTGTAPAALRAEEPKLSPAFTRRSRRRVSTEKEESKDTTSAKSKQ
ETVEGKASDSGRGRGRARQKSETSTESGGIPARLEVPSTTAGRVAPEEDLESCVVDEGKA
SRNSRSRSRRTASVSSEDQPSQAPDQTALVKPAETPGGRTDRRRGGSAVVSPKLDVDNSA
SPAGQAAEVRRTSRRRPSTQTEEESEHKVDTPKDGRKGRRRTASEVSEGSLETGEPQAKV
ARGRRRASAASALKDEGQHGTPEMEQLEVPVGRRKASRKRMSSPPSRTEDDVQSISSVDE
PSEGFSCRSSSRSQKKQDEPMTPSSQEAVGTGRKRRSQAASLQASPGESSASPRLKMLRR
LSASVYKVMFTGVMDENGEALIHKLGGEMADSILDCTHLITDKVRRTVKFLCALARGIPI
VTPNWLEKSFSSNCFLPPSGFLVKDSDQEKYFNFSLAESLQKAKQCPLLEGYEIHVTPNV
KPEPIQMKDIIQCAGASFLSRMPKAHKERTVIVSCTEDLAKCKAALEASIPVVNAEFLLT
GILRQSADTEAHRLEGTEVQAGDRGGKRGRASAAPAGRAKRRR
NT seq 6252 nt   +upstreamnt  +downstreamnt
atgatggaacagactcagctgcttgaggacccatccctcttggaggaggaaagccccgag
gtcatagcgagcgaggtagccagccaggagcctgttgggaagttgtgcgtcttcaagtgc
acctactgcccagagaaagagttcctgctgtacagaggcgagaacgtcattgggcgtcat
aagagctgccgaatccacatccctgcgacatccgtctccaagaagcatgctgtgattgag
gtggaggcggactcccatctcatccacgactgcgggagcctcaacaagacccgtcgcagg
aagatggtgctgaagccgtacgttcgctacagcctggaggacagagacctgcttatgttt
gcggatgtggcctgtcagtacaccgtgctgccccagccaatcagaatacggagcctggag
gctccagccattcaggagttaccggtcgtgacgtcaccggaggtacgtgtggatgagcag
aggcagggagtgatctcacaggaagtgccagtcagccgggcaaaacaggatgtgacctca
caggaagctccagttgggcgggagaaacaggaagcggcctcacgggagacggctgccggc
gaccccagctccgattcggatgatgactccctcctggttccagcaacccaggagaacccg
gtaaggcagctggcattggagaaaacccctgccccatcaaagcgatgtttagtgacgcca
ctggtgaaagattccgatgatgaggagaatgatggaggacgatacaggaatcttcaaagg
catcaacaaagttccgactttgtggatgcacacggggagcgatctcgcttgtcgttcctg
tctccctctaccacagttccagaaagtgatgaagaagagtctgaccctttcacacctgcg
attaaagtgtcggcggtccagatccattatgacagcaacaccgttactgaagatgagcag
gtggggactgagcccagcagggccagtgggaagcagaagggggcccccaaatcctcacag
aatggggctgcagaaaccagcgctcacagtgcacagggctctgggcaggaagtaaacaag
gcggtggcggcaggacaggctgccaccaacagcgacaccgacgttgacgaggacatcgct
ccaaaggatgtggagcaaagggtaagcagcgcacaaccgatggccgtgagtgccggtgag
gatggtcaaaggtcaggagaatgccaccaggatgtggcaaatggaaacgtgccagcagtt
ctggctgaaggtggcagcagagttgttgacaaaaataaggaagtaccaagtgcgtccagc
gggaaagattcagacgcaagttgccagggtaaccaatcagcaagagacagtggttttgtg
ggagggccggttgagcaccagctgccgaatttccacttggacagtgacacggacacagag
gatggagtggagaaatcagcccttgggcccaacttgaacgccaggactgactttcatatg
gacagtgatacagacgttgaagaggatggggacgaggtgaagaaatcggacagcgagccc
gtatcgggcgccagagctgacctccacatggacagcgatacagacgttgaagaggatggg
gacgaggtgaagaaatcagacagcaagcccgtattgggcaccagaactgacctccacgtg
gacagcgatacagatgctgaagaggacggggatgaggtgaagaaatcgggcaatgagcct
ctattgggtgccagatgtgacctggaggtggacagcgatacagatatagaggacaattct
gagccaccaacactcagagcagaagctctgcatcgacaggacagcagcgacacggacact
gatgccacagtccagcctacccagtgttacctggcaaccgtttccagcagtgaggaggca
gaaatgcagccagctgaagtgacagcaggcagtggcgtggaagaggaggaggaggaggcc
actcagttcttcatcccacagacggatccttttaaaaagccattctcattaagttccagc
aggaggagccagagtacacaagctaaagtaactgctccagagagagaagaggacttggac
gatgaccactttgtgattgcagaaactcagtccttctgcactgacaatgatgctgacgtc
actaatgtttctgacaagagtggtctggaagcctacgaggaggaagctacccaggcttat
gctgtcgaccttccgcagtctcctgaaacagaggctggagcatcggggaaacaggaggaa
gaggacacccagcctgtgccttgcacaaaaaccagcacctctccccatcttgaacaggag
gaagccacacaactttacgatgttgagcagcctgtaacttcagagaccatgcctatgagc
agactggcgtcgacggaccgctcatggaaaggagagatgcatgcagtggctaatagcaca
aactttgcaccagaaactgctgctctgcctgggactgctgctgttacagctgctggaagt
gctgtggatatttcaatcaacgatacacagcccctagctggtactataaaccaggcaccg
aaaggtcttgcaccagtaattcatacacaagaacacaaaaggactgatgcttccacggag
ggtacacagccagtagactctgtacaaaccaataaaacagcattgtctggagggagtcga
gactattctgcaagtcatgaagctggagaatctggtgcggaaggaacatcgactgtggag
ggttatgcagctgatgacgacacccaaccagtcagccagttacaaaaaaataaaaaactt
aatctagaagtccatccagtagaagatgacacacaaccagaagataaagaacctgttaga
gaaacccattcagcagaagttgacactcaaccggttggccagctacaggaaagtgaagag
cccactgtggatactcatccagaagaagacagcacacaactaattgctcagtcacaagaa
cctgaagagtttgcaatggacgtcaatccagccgaagatgatacccaacctgttggccaa
ctgcaagaagcaaaagagcttgttagggatgtccatatagaagaaagtgatacccaaccg
gttggctttctgttttcttcgtctagaaggacttcacaagaagaacagcctactatggat
atcagtgcaacaggaagtgatactcaaccaattgttgactctccaacttctggtggttgt
actgcaaagagtcatctagctgaagaccttcagctacaattatctgaagatgcaactcag
ccaatcctccctatagacctttctacaaacttgagcagagaatcggcaaaacgtgcaacc
tgtactgatgttgaagtaggaaaaagttctgccacagagattagaataggcatggacctc
cccgaggttggtgatgaagatgaaacgcaggcagaggtgcctttgtgctctgctggtctt
ggtgattctgaagaacctactgaagttactaacgaagaagtacttttggatgaagcaaac
gtacagcctgctaaggcaggcatggaggcgtctgcctccactgtagccttgagtgaaaat
gacacgcagcccattgaggttgcacctgaaactctgagcgttcctcagctgaaacctgga
ccagctgaagtggagaatattttgcagccttccctgaagaaagataagaagggtgaagga
gcaaaagcacttcttggaaggagaggtcgatcgaagaaggaggaaaataaggaggtggaa
gctggaaggagaacggagaaatccagcagcggtagcactcagctggccccagagaaggta
cctgctgatgagtcaggaggaacggcaaaagaggacttggctgtggaaggaagaggccgg
agaaaacccagagctcgaaaatccacagctgctcagcctgatggagacggagggggcggc
ccaccttcccgcaacagctcgaggaggagcaacccgcctttggaagacagtgctgaggtg
cacgaggatgaatcccggaaaggcaggaagcgaggttgggtgggacgagggcgccgaaga
gcgtcctctgaaggagaatgggcagctgctctgctatcagatacggccggagaccaggta
gtggtggaaggtgctcaaggcagctctgcagaaaaggtagctacgtctaaactggtggag
agcagcaaaactggggcaactgctgagccaacgagcaccagaaggggtaagaaaaggggc
aaagctctgcataaacccagtacagtgacagtggtgcctaaacagcctgaagaagaagcc
acggcatcgggaatctcatcagcaaccattcagaaagaaactaggactagaaggagatct
gcttccttgacggagccactggaggcagatgatgggagaggtcttgcatcggaaaggagc
aagggaagagggaaaaaggctgccgctgaatcttctgcggaaaaggaccaaggccttaca
gctggcaatgagatagccgtcccctcaagagcagggagggctaggggaactgggactgca
ccagccgccttgcgggccgaggagccaaagctttcgcctgccttcacaagaaggtctaga
agaagagtctccaccgagaaagaggagagcaaagacaccacctctgccaaaagcaagcaa
gaaacagtggagggaaaagcctctgattctgggagggggagaggaagggcaaggcagaag
agcgagacgagtacagaaagtggtggaattccagcaagattagaagtaccttctaccaca
gcaggtcgtgtagctccagaggaagacctagaaagttgtgtagtggatgaaggcaaagct
tcaagaaacagtcggtcaagaagtaggagaactgcctctgtatcttcagaagaccaacct
tctcaggccccagatcagaccgctttggtgaaaccagcggaaaccccgggaggaagaaca
gacaggaggaggggaggttcagccgtggtttctcccaagctggatgtggacaacagtgcc
tcacctgcaggtcaagctgcagaggtcagacggacgagcaggaggaggccaagcacgcaa
accgaagaggaaagcgagcacaaagtggatacgcctaaggacggcaggaagggcagaagg
cggacagcttctgaagtatctgaagggtctttggagactggagagccccaagctaaagta
gcaagaggaaggagacgagccagcgcggcatctgctctgaaggatgaggggcagcacggc
acccctgagatggagcagttggaagtccccgttggcagacggaaagcttccaggaagaga
atgtcaagcccaccatcacggacagaggacgacgttcagagcatttcgagcgtggatgag
ccatctgaagggttcagctgcaggagcagcagcagaagccagaagaaacaggatgaacct
atgaccccatcgtctcaagaagctgtgggcacgggacggaaacggcgttcccaggctgcc
tccttacaggccagcccgggcgagtccagcgcctcccccaggctcaagatgctgcggcgg
ttatcagcctctgtgtacaaggtcatgttcaccggggtcatggacgagaatggagaggcc
ctgatccacaagctgggaggggagatggccgactccatcctggactgcacccacctcatc
acggacaaggtcagacgcaccgtgaagttcctctgcgccctggccaggggcatccccatc
gtcaccccgaactggctggaaaagtccttcagcagtaactgcttcctgccccccagtggg
tttctcgtgaaggacagcgatcaggaaaaatatttcaacttcagtctggcagagtccctg
cagaaagccaagcagtgccctctgctggagggctacgagatccacgtgaccccaaatgtt
aaacctgagcccatccagatgaaggatattatccagtgtgctggagccagctttttatcc
aggatgcctaaagcccacaaggagcggaccgtgatcgtctcctgcacggaagacctcgcc
aagtgtaaagctgccctggaggcctcgattcccgtggtcaacgcagagttcctcctgacc
ggcatcctccggcagagtgccgacactgaggcgcaccgactggaagggaccgaggtgcag
gccggggatcgtggcgggaagcgtgggcgcgccagtgctgccccagccggcagggcgaag
aggagacggtag

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