Latimeria chalumnae (coelacanth): 102349036
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Entry
102349036 CDS
T02913
Symbol
VCP
Name
(RefSeq) valosin containing protein
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04137
Mitophagy - animal
lcm04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
102349036 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
102349036 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102349036 (VCP)
03009 Ribosome biogenesis [BR:
lcm03009
]
102349036 (VCP)
04131 Membrane trafficking [BR:
lcm04131
]
102349036 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcm04147
]
102349036 (VCP)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
102349036 (VCP)
Ribosome biogenesis [BR:
lcm03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
102349036 (VCP)
Membrane trafficking [BR:
lcm04131
]
SNARE
SNARE associated proteins
Others
102349036 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
102349036 (VCP)
Exosome [BR:
lcm04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
102349036 (VCP)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
AAA_25
AAA_7
ATPase_2
AAA_18
ATPase
ABC_tran
AAA_24
Viral_helicase1
ResIII
NB-ARC
TsaE
NACHT
Sigma54_activat
SLFN-g3_helicase
DUF815
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
102349036
NCBI-ProteinID:
XP_014348516
LinkDB
All DBs
Position
Un
AA seq
767 aa
AA seq
DB search
MFLTTIETRASLLAIDIHSEFVEATARVTKVTVSAEKEPVERGTLLMGMTDTGHLPECSN
EGEEMNQFKDNSNLYQSSKSDDLTTAILKQKSRPNRLIVDEAINEDNSVVSLSQAKMDEL
QLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVVSIQPCPDVK
YGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETD
PSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPAL
FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA
FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR
PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA
DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRYPVEHPDKFLKFGMTP
SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAA
PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID
PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLDFLAKMTNGFSGADLTEI
CQRACKLAIRESIENEIRRERERQTNPSAMRKRVARRQNKKPCFKVW
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgacaaccattgaaactagggcaagtttacttgccattgatatccacagcgag
tttgtggaggccacagctagagtgactaaagtcacagtatcagctgaaaaggagcctgtt
gaacgtggcaccttgttaatgggaatgaccgacaccggtcatttgccagagtgcagtaat
gagggggaggaaatgaatcagtttaaagacaacagcaacctttaccaaagctccaaatca
gatgacttaacaacggctattctgaaacagaagagtaggcccaaccgattaattgtggat
gaggcaatcaatgaggacaacagtgtggtctctctgtctcaggcaaaaatggatgagctg
cagctctttcgaggcgacacagtgctgctgaagggaaagaagaggcgagaagcagtctgc
attgttctgtcagatgacacctgttccgatgaaaaagtccgcatgaacagggttgtccgc
aacaacttgagagtccgactgggtgacgtggtcagcatccagccttgtcctgatgtgaaa
tatggcaagcgcattcatgtactgccaatagatgatacagtggaggggattactggaaac
ctctttgaggtgtatcttaaaccatatttccttgaagcatacagaccaatcaggaaaggt
gacattttcctggttcgtggtggtatgcgtgctgtggagttcaaagttgtagagactgat
ccaagcccgtactgtatagtcgctccagacacagttatacactgtgagggagagcccatc
aagcgagaggatgaagaagaatccctgaatgaagttggctatgatgacattggtggtgtc
aggaagcagctggcacagatcaaggagatggtggagcttccactccgacaccctgcacta
ttcaaggctattggggtgaagccccctcgtggtattttgttgtacggaccacccggtaca
ggaaaaactctgattgctcgggctgtagcaaacgaaactggagcattttttttcctgatc
aatggcccggagataatgagcaaacttgctggcgagtctgaaagcaatctaaggaaagca
tttgaagaagctgagaagaatgctcctgctattattttcattgatgaactggatgctatt
gctccaaagagagaaaagacacacggtgaggttgaacgccgtatcgtgtcccagttgctg
actttgatggatggtctaaagcagagagcgcatgtgatcgttatggctgctaccaaccgg
cccaacagcatcgacccagctcttaggcgatttggccgcttcgacagagaggtggatatt
ggtatccccgatgccactggacgcttggagatcttgcagattcacaccaagaacatgaag
ctggctgatgatgttgatctggaacaggttgcaaatgaaactcatggtcacgttggtgcc
gacttggctgccctgtgttccgaggctgccctccaggctatccgaaagaagatggatctg
attgacctggaagacgaaactatcgatgctgaagttatgaactcgctggctgttacgatg
gatgactttaggtatcctgtggagcatccagataaattcctgaagtttggaatgactcct
tcaaagggtgtgttgttttacggacccccgggttgtggcaagacattgttggctaaagct
atcgccaacgagtgccaggccaacttcatttccatcaagggaccagagctgcttaccatg
tggtttggtgaatctgaggccaatgtgcgcgagatctttgataaggcgcgccaagctgct
ccttgtgtgctgttctttgacgagctggactcaattgccaaggctcgtggtggcaacatt
ggtgacggaggtggcgctgctgaccgtgtgatcaaccagatcctaaccgaaatggatggt
atgtctaccaagaagaacgtgttcatcattggtgctaccaatcgtccggacatcattgac
cccgccatactgcgtcctggccgtctggatcagctgatctacatcccactgccagatgag
aagtcgcgtgtggctatccttaaggccaacctgaggaagtctcctgttgctaaggatgtg
gatttggacttccttgctaagatgaccaatggcttctcaggagctgacctgaccgaaatc
tgccagcgagcctgtaaactggccatcagagaatctatcgagaatgagattagaagagag
cgtgagaggcagacaaacccttctgctatgaggaagagggtggcgagacgccaaaataag
aaaccgtgtttcaaggtatggtag
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integrated database retrieval system
