KEGG   Latimeria chalumnae (coelacanth): 102349091
Entry
102349091         CDS       T02913                                 
Name
(RefSeq) collagen alpha-4(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm04382  Cornified envelope formation
lcm04510  Focal adhesion
lcm04512  ECM-receptor interaction
lcm04518  Integrin signaling
lcm04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102349091
   04518 Integrin signaling
    102349091
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102349091
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102349091
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    102349091
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcm04147]
    102349091
   00536 Glycosaminoglycan binding proteins [BR:lcm00536]
    102349091
Exosome [BR:lcm04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102349091
Glycosaminoglycan binding proteins [BR:lcm00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102349091
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 102349091
NCBI-ProteinID: XP_014342147
LinkDB
Position
Un
AA seq 1117 aa
MCTDTASSDIGAITVVAQKGGQVGALGPQGPLGDPGYPGITGLHGEKGAQGETGQPGMPG
VKGEEGLPGPEGPRGNPGVDGCKGLRGDPGFLGKPGCEGVQGPPGAPGQKGEKGNIVIIS
VSMRGPPGEKGRTGETGVPGLQGRNGIIGPMSPAGTPGLQGPKGVTGAPGEQGNMGIGIE
GQEGDQGAKGITGAPGRPGSSGVKGDHGDLGFPGPPGDEDEIVPKKGPPGDPGLPGIPGP
PGEIGPRGPPGIPGRPGEDSVGASGRRGFPGAPGFKGDKGNPGEPARIDFNTRFLEAVGP
AGLPGPPGPPGPPGPNATYCSGTGLPGLPGPKGDIGAPGQQGKKGSKGELGDCECGSPVQ
GPPGSQGPPGLIGKKGSPGGPGKEGNPGDLGRTGIMGPKGPTVYDCSNKILGTFLTPGSS
TRGQSGLQGSRGSPGLPGRPGLDGNSGQTGIPGPPGNPGTALPGDRGLPGLLGPPGLQGQ
TGPPGFGIMGEPGMRGQAGGPGVPGTPGAQGPKGQRGDTLPCITDLTPGSPGLPGANGCS
GLKGERGPPGAPGTRGFDGQKGLKGQKGRSDIPGPAGFPGPRGEPGFPGTTEFVPDGSPG
PPGQSGAPGQKGNLGDITAGCPGALGKRGEVGLPGAKGILGDPGLPGIKGLAGLPGTFGS
KGMRGDPGCVGLRGLPGSPAEACEEGPQGQPGSSGIQGPSGNPGIPGNKGQKGNLGPPGS
AELKGQAGYPGMPGTPGSPGSRGGPGYPGDSGIPGIPGPKGAKGLAGIEGFPGDSGMPGQ
PGSLGTKGEPGERGREGIIGDRGDLGSKGSKGSPGSTGPSIVLPVKGEQGDPGDPGQGGS
FGSQGKKGPPGVEGIPGYPGRYGLPGIQRGLPGEKGLPGKCGQQGFPGSPGPSGIIGFPG
MPGDRGEPGLPGSLGNPGSIGNTGLKGERGDSSGLPGSPGSRGGPGERGYPGQPGSLGNS
GLPGTPGDPGTQGPPGPAGCSGRRGFPGSQGFPGPQGGQGPEGPPGAKGPPGTPGCPGIQ
GIRVSFALPLKTDQSTNNNFLKQPVRTSQQRRKVNASFFENLEMLKNKAKLTNHNLWEYY
KDYVVRPPSSNASTSAQVASQSEDEVTNSDETENRDC
NT seq 3354 nt   +upstreamnt  +downstreamnt
atgtgtactgacactgcatcctctgacataggggcaattactgtggtagcacagaaaggg
gggcaggttggtgctttagggcctcaaggaccactaggggatcctggatatcctggtatc
acaggtttgcatggagaaaaaggagcacaaggagaaacagggcagcctgggatgcctggt
gtgaaaggggaagaagggttaccaggaccagaaggaccaagggggaatcctggcgtagac
ggatgtaaaggacttagaggagatccaggcttcctaggaaagcctggttgtgaaggagta
caaggccctcctggtgctccagggcagaaaggtgaaaaaggaaatatagtaattatttca
gtttccatgagaggtccaccaggagaaaaagggcgtacaggagaaacaggggttccaggt
ttacaaggtaggaatggaattataggcccaatgagtcctgcaggcacaccaggtttacaa
ggaccaaaaggtgttacaggagcaccaggagaacagggtaacatgggtattggaatagaa
ggccaggaaggagatcagggagcaaaaggaattaccggtgctcctggaaggcctggatct
tcaggtgtaaagggagaccatggagacctaggatttccaggaccaccaggtgatgaagat
gaaattgttcccaaaaaaggtcctccaggagacccaggtcttccaggcattccaggtcct
cctggtgaaataggacctagaggtcctccaggtatcccaggcagaccaggcgaagattca
gtgggtgcttctggtcgaagaggatttcctggtgcacctggatttaagggcgacaaaggt
aatcctggtgaaccagcaaggattgattttaacacaagatttctagaagcagtgggacca
gctggtctgcctggaccacctgggccacctgggccacccgggccaaatgctacatattgt
tcaggcactggccttcctggcctacctggtccaaagggggatattggggctccaggccaa
caaggaaaaaaggggtcaaaaggtgagcttggtgactgtgaatgtggctccccagttcaa
ggtcctcctggatctcaaggtccccctggactgattggaaagaaaggaagtccaggtggc
cctggaaaagaaggaaacccaggtgatttgggcagaactggtataatgggaccaaaaggg
cccacggtatatgactgcagtaacaagattttgggtacatttctaactcctggttcaagt
acaagaggacagtcaggtcttcaagggtccagaggatctcctggactaccaggcagacca
ggactagatggaaacagtggtcagactggtatcccgggacctcctggcaatcccggaaca
gccttgccaggtgacagagggcttcctggcctcctaggaccacctggattacagggacaa
acaggacctccagggtttggaattatgggtgaacctggtatgagaggtcaagcagggggc
ccaggtgtgccaggtacaccaggagctcagggtccaaaaggacaacgaggtgacacctta
ccatgtattacagacctcacacctgggagtcctggtctaccaggtgcaaatggctgctca
ggattaaagggagaacgagggccacctggtgcaccaggaacaagaggctttgatggacaa
aaaggacttaaaggccaaaaaggaagatcagatattccaggacctgcaggttttcctggg
ccaaggggtgagccaggtttccctggaacaactgagtttgttcctgatggaagcccagga
cctccaggtcaatcaggtgctcctgggcaaaaaggcaatttgggtgatatcacggcaggc
tgtccgggagctcttggtaaaagaggagaagtgggattacctggagcaaaaggaatatta
ggagaccctggccttcctgggattaaaggactggctggactgccaggaacatttggttca
aaaggcatgagaggagatccaggttgtgtaggtttgaggggattgccagggtcaccagca
gaagcatgtgaagaaggcccacaggggcagccaggatcttctggtatccaaggaccttca
ggtaacccaggcatacctggcaacaagggtcagaaaggaaatcttggtccaccaggttca
gctgagttgaaaggtcaagctggatatcctggaatgccgggaacacctggctcaccaggc
tctcgaggagggccaggatatccaggagacagtggtatacctggaatacctggaccaaag
ggtgccaaaggtcttgctggtattgaagggttcccaggagattcaggcatgccaggacag
ccaggaagccttggcacaaagggagagcctggggaaagaggcagagaggggattattgga
gacagaggagatttaggttcaaaagggtccaaaggttctccaggatccactggtccttct
atagtacttccagtaaaaggagaacagggagatccgggagatcctggccagggtggatct
tttggttcgcagggtaaaaaaggtccaccaggagttgaaggtatacctggatatccaggc
agatatggtctaccagggattcagaggggattacctggtgaaaaaggattgcctgggaaa
tgtggacaacaaggattcccaggatctccaggaccaagtggaattattgggtttccggga
atgcctggtgacagaggtgagccaggtttgccagggtctttggggaatccaggatccatc
ggtaatacaggactcaaaggggaaagaggtgattcaagtggcttgcccgggagcccaggc
tcacgaggaggtcctggggaaagagggtacccaggacaacctggttccttagggaactca
ggattgccaggtaccccaggggacccaggaacacaaggaccacctggaccagctggttgc
tcaggaagacgaggttttccaggttctcaaggttttccaggtcctcaaggaggtcaagga
ccagaaggtccacctggagctaaagggcccccaggaactccaggatgtcctggcattcaa
ggaataagagtatcatttgcccttcctcttaagactgatcagagtacaaacaataacttc
ttgaaacaacctgtaagaacttctcagcagagaaggaaagtgaatgcaagtttttttgaa
aacctggaaatgctgaaaaacaaagccaaactgacaaatcacaatctgtgggaatattat
aaagactacgtggtaaggccgccttcttcaaatgccagcacctctgcacaagtagcctca
caatcagaagatgaggtaactaatagtgatgaaacagaaaaccgagattgttga

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