KEGG   Latimeria chalumnae (coelacanth): 102349314
Entry
102349314         CDS       T02913                                 
Symbol
PCDH18
Name
(RefSeq) protocadherin-18
  KO
K16499  protocadherin delta 2
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:lcm04515]
    102349314 (PCDH18)
Cell adhesion molecules [BR:lcm04515]
 Cadherins
  Protocadherins
   102349314 (PCDH18)
SSDB
Motif
Pfam: Cadherin Cadherin_2 PepSY TMEM154 MpPF26 Cadherin_C_2
Other DBs
NCBI-GeneID: 102349314
NCBI-ProteinID: XP_006005284
Ensembl: ENSLACG00000003658
LinkDB
Position
Un
AA seq 1153 aa
MVANRNQIYSSRFTAMDCKNLQLYHTFCTAQFVFIILLIVTLQSQDTLGKTLEYKIYEEQ
RVGSVIASLSEDVADVLARLPNPSSVRFRAMQRGTSPLLLVQEENGEISIGAKIDREQLC
QKNLNCSIEFDVITLPTEHLQLFHVKVEVMDINDNSPQFSRSVIPIEISESAAVGTRIAL
DSASDLDVGENSLYTYSLSPNEYFDIEVRTRTDGAKYAELIIVRELDRELMSTFQLQLTA
SDRGVPQKSSFSIVKISISDSNDNSPMFEEQSYIIQLLENSPVGTLLIDLNATDPDEGAN
GKVVYSFSSHVSPKIHETFKIDPENGHLSLIKQVDYETIKSYEIDVQAQDLGPNSIPGHC
KIIIKLVDVNDNKPDININLMTPGREEVAYISEGAPMDTFVALVSVQDKDSGLNGEVVCK
LHGHGHFRLQKTYENNYIIFTNTSLDREKRSEYSLTVIAEDKGIPNLSTVKHFTVQITDE
NDNPPHFQKSRYEIFLSENNSPGVYITSVMASDPDEEENGQVTYTILESYILGNSITIYL
TIDPSSGAIYALRTFDHEEVNRIVFVVQARDGGSQQLISNSTVILTIIDENDNPPVIVSP
ALHNGTAEISIPKDAEHGYLATIIRATDRDSGINSELSCAITASSQDGIFTIDAKTCEVF
TNISMEKVPCSDWEITVEVKDKGSPQLHAKAALKFTLFELLNEDFRPIPTISSHTSLDVS
LIIIISLGAICTVLLIIMIIFIAKCNREKNDTNSYNCRVAESTYQNHPKRPSKQIYKGDI
TLVPSANGTLPIRSHHRSSPLSTPTLERGQMSSRQSQHSRQSLSSLVTISSNHVPENLEL
THSTPPVEQVSQLLSMLHQGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGHGDSEAG
DSDYDLGRDSPIDRLLGEGFGDFFSADGHRVSAVMKLCTDECRVLGHSDQCWMPPLPSPS
SSDYRSNVYIPGEELHQHQQPLEEDCQSVDSSERKKSFSTFGKETLNEETDDMCTSSFLT
EMNSVFQRLLPPALDTYTECNEVEQLNSLERRKGQLPAKTLAYPQGVAAWAANTYFQNPG
STMGQSNGAHLSMQPTSKWLPAMEEIPENYEEDEFDNVLNQFNVNRRESKHELMDASELV
AEINKLLQDVRQS
NT seq 3462 nt   +upstreamnt  +downstreamnt
atggttgccaataggaatcagatttactcatcaagatttactgcaatggattgcaagaat
ttacagttgtatcatactttttgtactgcacagtttgtgtttattattttattgatagtt
actttgcaaagtcaagacacactgggtaagacattagagtacaaaatttatgaagagcag
agagttggatctgtgattgcaagtctgtcagaggatgtggctgatgtattagccagattg
cctaatccttcttctgtccgcttccgagccatgcagagggggacctctcctttgctttta
gtccaagaagaaaatggagaaataagcattggggctaaaattgaccgggaacagctctgc
cagaagaacttgaactgttctattgagtttgacgtgattaccctccccactgagcatttg
caacttttccatgttaaagtggaggtgatggatataaatgacaactcaccccaattttcc
aggtctgtgattcctattgaaatctctgaaagtgctgctgtgggaaccagaatagcattg
gacagtgcttctgaccttgacgttggagaaaactccctctatacttattcattatctcca
aatgaatattttgatattgaggtgcgaacaaggactgacggtgccaagtatgcagaactg
attatagtacgagaactagacagggaactcatgtctacctttcaacttcagctgacagct
tcagacagaggtgtacctcaaaaatctagcttttccattgtgaaaatcagtatttctgac
tcaaatgacaatagtccgatgtttgaggagcagtcatatattattcaactcttagagaac
tcaccagtggggactttactaatagacctaaatgccactgatccagatgagggcgctaat
ggcaaagtagtttactcctttagtagccatgtctctcctaaaatacatgagacatttaaa
atagacccagaaaatggacatttaagcctcataaaacaggttgactatgaaactatcaag
tcctatgagatagatgtacaagcacaagacctggggccaaactccatcccaggtcactgc
aaaattattatcaaactcgtggatgtcaatgataacaaaccagacataaacatcaaccta
atgactcctggcagagaggaggtagcttatatttcagaaggggcacccatggacactttt
gtggctttggtcagtgtgcaagacaaggactctggtttaaatggagaggtggtatgcaaa
cttcacgggcatggccacttcagacttcaaaaaacctatgaaaataactacattattttt
acaaatacaagtttagatagagagaaaagatcagaatacagtctcacagttatagcagag
gacaagggaataccaaatctctccacagtgaaacactttactgtacagatcacagatgag
aatgacaatccaccccatttccagaaaagcagatatgaaatcttcctgtctgagaataat
tcacctggagtatacatcacctctgtgatggcgtcagaccctgatgaagaagaaaatgga
caagtgacgtacaccattttagaaagttatattctaggtaactctatcactatctattta
accatagacccctccagtggcgcaatttatgctctaagaacctttgaccatgaggaagtg
aacagaattgtttttgtggttcaagctagggatggagggagtcagcaacttatcagtaat
tccacagttatattgacaataattgatgaaaatgacaaccctccagttatagtttcacct
gctttgcataatggcactgctgaaatttctattcctaaggacgctgaacatggctacctg
gcaaccattataagggccactgatagagactctggcattaactctgaattgagctgtgcc
attacagcaagtagtcaagatggcatttttacaattgatgccaagacatgtgaagttttt
accaatatcagtatggaaaaggttccctgctcagattgggaaatcactgtggaagttaaa
gataaagggagtccacaactacatgccaaagcagctttaaaatttaccttgtttgaactt
ttaaatgaggatttcagacccatacccactatcagtagccacacttccttagatgtttca
ttgatcattattatatcactgggagccatttgtactgttcttttgattattatgataata
tttattgctaaatgtaatagagagaagaacgacactaattcttacaactgccgtgtggct
gaatctacttaccaaaaccatccaaagagaccatcaaagcagatttacaaaggagacatc
accctggtgccctcagctaatggcacattgcccattagatctcatcacaggtcctctcct
ttgtcaaccccaaccttggaaaggggacaaatgagcagcagacaaagtcagcatagccga
caatcactcagtagtctggtgacgatctcatcaaaccatgtgcctgaaaacttggaactc
actcattcaactccacctgtagagcaggtttcccagcttttgtctatgcttcaccaaggt
caataccaaccaaggccaagctttagaggaaataagtattcaaggagctacaggtatgct
ctgcaagacatggataaattcagcctgaaagacagtggccatggtgacagcgaggcaggt
gacagtgactatgatttgggcagagattctccaattgacaggcttcttggggaaggattt
ggtgacttcttcagtgcagatgggcacagagtttcagcagtgatgaagttatgcacagat
gaatgcagagtattgggacactcagatcagtgctggatgccacctcttccttctccatcc
tcttctgactatagaagcaatgtgtatattccaggagaagaactccatcagcaccaacag
ccacttgaagaggactgtcagtctgttgactccagtgaaaggaaaaagagcttttctacg
tttggcaaagaaactttaaatgaagagacagatgatatgtgtacctcctcctttcttaca
gaaatgaacagtgttttccagcgcttgctgcctccagcactggacacttacacagaatgc
aatgaagtggagcaactgaattcattggagcgcaggaagggacagttgccagctaagact
ttagcttatccacaaggagtagcagcttgggcagcaaacacttattttcaaaatcccggg
agtaccatgggccaaagcaatggggctcatttaagcatgcagcccacctcaaaatggctt
ccagccatggaagaaatcccagaaaattatgaagaagatgagtttgacaatgtcctcaac
cagtttaatgttaatcggcgtgagagtaaacatgaactcatggatgccagtgagctggta
gcagaaattaacaaactgttacaagatgtcaggcaaagctag

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