Latimeria chalumnae (coelacanth): 102349905
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Entry
102349905 CDS
T02913
Symbol
PABPC4
Name
(RefSeq) poly(A) binding protein cytoplasmic 4
KO
K13126
polyadenylate-binding protein
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03015
mRNA surveillance pathway
lcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102349905 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
102349905 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102349905 (PABPC4)
03041 Spliceosome [BR:
lcm03041
]
102349905 (PABPC4)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102349905 (PABPC4)
mRNA cycle factors
Stress granule specific factors
102349905 (PABPC4)
Spliceosome [BR:
lcm03041
]
Complex C
Other components
Complex C specific factors
102349905 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_7
RBD_DEAH11
RRM_occluded
RBD_RDR6
RRM_5
RRM_3
ATP-grasp_2
POP1_C
Motif
Other DBs
NCBI-GeneID:
102349905
NCBI-ProteinID:
XP_005993954
Ensembl:
ENSLACG00000011907
UniProt:
H3AV52
LinkDB
All DBs
Position
Un
AA seq
634 aa
AA seq
DB search
MNTTASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEDMDDERLKELFDKHGKTLSIKVMTDASGRSKGFGFVSFEK
HEDANKAVEEMNGKDINGKLVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQPAAGGYFMPAVPQAQSRA
TYYAPNQMAQMRPGPRWQQQGGRPAGFQAMPNAMRQAGPRPSLRHMAPSSNPQGPRGIPN
VAQRFGVATAAQNLAPRPAVAAPPPRAVPPYKYATTVRNPQPPVQPLTVSQPPQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaactgccagcagttaccccatggcctctttgtatgtgggcgacctccaccca
gatgtcactgaggcgatgctgtatgagaagttcagcccagcagggcccgtcctgtctatt
cgggtctgcagggacatgatcacccgccggtccctcgggtatgcttacgtcaattttcag
cagcctgcagacgccgagcgcgctctcgacacaatgaactttgatgtgatcaaaggcaag
ccaatccgcatcatgtggtctcagcgtgacccctcccttaggaaatctggagtcgggaat
gttttcattaaaaacctggacaaatccatcgacaacaaggctctttacgacaccttctca
gcttttggcaacatcctttcctgtaaggtggtgtgcgatgagaatggatccaaaggatat
gcttttgttcacttcgagacgcaggatgctgcagatagagccattgagaagatgaatggc
atgttactcaatgaccggaaggtgttcgttggccggtttaaatcccgcaaggagcgtgag
gcagagctgggagccaaagcaaaagaattcaccaatgtttacatcaagaactttggagaa
gacatggatgatgaaagactgaaagaactgtttgacaaacatggtaaaacccttagtatt
aaagtaatgacagatgcaagtggaagatccaaaggcttcgggtttgtgagctttgaaaaa
cacgaagatgccaacaaggctgtggaggaaatgaacgggaaggatattaacgggaagctg
gtgtttgtgggccgtgctcaaaagaaggtggagaggcaggcggagctgaagcggaagttc
gagcagctgaaacaggagaggatcagccgctaccagggtgtaaacttgtacattaagaac
ctggatgacaccattgatgatgaaaagctgaggaaggaattctctccatttggttccatc
accagtgccaaggtaatgctggaggagggacgcagcaagggtttcggctttgtttgtttc
tcttcgcccgaagaggccaccaaggcagtgacggagatgaatggccgcatcgtgggctct
aagccactttacgtggcccttgcacaaaggaaggaggagcggaaggcccaccttaccaat
cagtacatgcagcgcattgctggaatgagggccatgccagccaacaccatcattaaccag
ttccagccggctgccggcgggtatttcatgccagctgtacctcaggctcaaagcagagct
acttactatgcaccaaaccagatggcccagatgcggcctggacctcgctggcaacaacag
ggaggaagaccagcaggattccaggccatgccaaatgcaatgcgccaggcagggcccagg
ccatctctccgccacatggcaccatccagcaatccccagggtccccgcggcatccccaat
gtcgcgcagagattcggcgttgccactgcagcccaaaacctggcacctcgcccagcggta
gctgcaccaccacctcgggctgtgcctccatacaaatatgccaccactgtccgcaaccca
cagcctccagttcaacccttaaccgtgtcacagccccctcagcccgcagtccatgtgcag
gggcaagaacctctaaccgcgtccatgctggcagctgcaccgccccaggaacagaagcaa
atgctgggtgagcgcctcttcccgcttatccaggccatgcatcccagcctggctggaaaa
atcacaggcatgttactggagattgacaactcggagctactgcacatgctggaatctcca
gaatctctgcgctccaaggtggaggaagctgtggccgtgcttcaggctcaccaggcgaag
aaggaggctgcccagaaagtgggcgttgttgctgctacctcgtga
DBGET
integrated database retrieval system
