Latimeria chalumnae (coelacanth): 102351071
Help
Entry
102351071 CDS
T02913
Symbol
COL4A2
Name
(RefSeq) collagen type IV alpha 2 chain
KO
K06237
collagen type IV alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04510
Focal adhesion
lcm04512
ECM-receptor interaction
lcm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102351071 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102351071 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102351071 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcm04147
]
102351071 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
lcm00536
]
102351071 (COL4A2)
Exosome [BR:
lcm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102351071 (COL4A2)
Glycosaminoglycan binding proteins [BR:
lcm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102351071 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102351071
NCBI-ProteinID:
XP_005999453
Ensembl:
ENSLACG00000011050
LinkDB
All DBs
Position
Un
AA seq
1704 aa
AA seq
DB search
MQSSMERLQAKVQQSNQLRNLLWLLLLVASLIDVAQAGGKSDKGPCGGRDCSGGCQCFPE
KGGRGQPGLTGPQGRTGPPGVIGPPGLPGQKGEIGDSGQRGVPGPKGDVGSRGVPGFFGA
DGIPGHPGQPGPRGKPGHDGCNGTVGDLGSVGIPGNVGPTGLPGFQGPKGQKGEPFLVTI
EVERYRGEIGEPGVPGYPGVQGPHGPPGAIGQVGFPGLQGFPGPPGFPGPKGHMGIRFQG
EKGERGDVGLPGPPGILVLYDLKSPVLVKFKGSKGLSGQAGEKGEEGVMGFPGQRGEPGR
DGDAGIPGKKGLLGIMGPLGANGLPGVKGERGEAGPQGPPTIVIAAHAFKGMAGDKGFLG
EMGPRGDTGIRGPPGLPGLDGLPAIFPGERGLPGVLGELGPKGFQGEPGYPAAQPGPPGH
AGQNGSPGLPGQPGLKGISGFTRFGEMLKGSQGLPGFPGVNGFPGRPGVKGFKGSPGDCV
CICNEACGEAPAGPPGHVGLPGLPGQPGIKGKTGDQGPSGPTGPSGPQGFPGSTGEQGPK
GQTGELAIAVKKGARGNQGDSIQGVPGEDGLPGRDGIPGIPGDRGLPGDGTKGFPGDKGL
PGLPGVKGARGEIGLPGLSFSGPKGVHGTQGDPGFDGVLGYPGPKGQPGDCYCGENIDQH
GVGKETDTAKTGEICICFGSLGPPGLSGVPGALGAKGHQGSPGPQGRRGYDGVKGVPGDK
GLGFPGLPGFPGIRGDKGLEGPPGLEGVVGAPGKLGVPGLKGKKGAPGDALGILKGFPGE
PGPPGHKGLKGIQGDQGLYGFKGIEGMPGIRGLKGERGPPGLTGIPGISGLRGSYGFPGA
QGQLGPSGIAGFPGAIGLPGDKGKSGDIGPPGPQGMKGHPGEVGDSGSVGGIGHKGAPGL
PGLTGIPGRQGLKGLKGSVGVPGFQGMTGPKGKPGVEGTKGKIGEPGYKGVKGTQGQQGS
KGSQGERGLPGKSLHNGLLYMMKGTKGDIGLEGVKGFTGPRGGKGMPGIPGKPGQPGTAG
NSSFEKGKIGEEGVIGVTGIKGLPGPAGPPGISGFPGMPGNRGDKGLQGAKGLPGKTGSA
GAVGTKGERVDLPGVPGNRGKAGIPGQPGAKGVKGETGGKGDSGFSGIEGMKGLRGEPGI
TGHTGFPGLLGSAGLPGLSGESGPPGQAGSSGQPGLPGRPGFLGIKGIDGLDGLPGSKGS
KGSPGADNWGPKGFPGNPGQKGEPGKAAAEMGPPGVPGGRGIPGDYGEPGPMGIPGPPGP
PGLPADYVIPGIIGDPGPTGLDGVPGFPGPQGQHGNASSPGEKGNAGDPGRTGAIGEKGS
TGDLGPLGLLGIPGFSGQKGQQGEPGLMGFPGTDGLPGDRGPFGPKGNSGLPGLKGPPGS
PGPLPTPLPVVKPVGSRGQQGIQGPSGATGASGPKGPSGDKGFMGPPGKQGLPGISGRSA
NPGYRGDQGSEGQRGPTGFEGLAGRTGPPGLPGMAGRSINVGYLLVKHSQSYNVPMCPVG
MTKLWDGYSLFYFEGQEKAHNQDLGLAGSCLPKFSTMPFLYCNPGDICYYASRNDKSYWL
STTASIPMMPVVEEEIKPYISRCSICEAPSLAIAVHSQDITIPQCPAGWRSLWIGYSFLM
HTGAGDEGGGQSLVSPGSCLEDFRATPFIECDGARGSCHYFANKYSFWLSAIDQSFQSSP
LPDTLKAGQLRTHISRCQVCMKNL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccagcatggaacgtttgcaagcgaaagtacagcaatcaaatcaattacggaac
ttattgtggctccttttactggtcgcaagtctgattgatgttgctcaagctggtggaaaa
tctgacaaagggccatgcggtggaagagactgtagtggtgggtgtcagtgctttcctgaa
aagggaggtcgaggccagccaggccttactgggcctcagggacgtactggaccaccagga
gttattggacccccaggtttacctggacagaaaggcgaaataggtgacagcggacaacgt
ggtgttcctggaccaaaaggagatgtgggatcaaggggtgttcctggattctttggtgca
gatggcattccagggcatccagggcagccaggaccaagagggaaaccaggtcacgatggt
tgcaatgggacagtaggagaccttggctccgtgggaataccaggaaatgtgggtccaacc
ggcttgcctggtttccaggggcccaaaggtcagaaaggtgaacctttcttagtgactatt
gaagtagaaaggtacaggggagagattggtgaaccaggagtaccaggctacccaggcgtt
caaggcccccatggtcctccaggtgcaataggtcaagtaggattcccaggactacaagga
tttccaggacctccaggatttccagggccaaaggggcacatgggaatacgttttcaggga
gaaaaaggagaaaggggtgatgttggtctaccaggccctcctggtattttagtactatac
gatttaaagtctcctgtattagtaaaattcaaaggaagcaagggactgagtggacaagca
ggagaaaaaggagaggaaggagttatgggatttccaggacaaaggggtgaacctggcaga
gatggagatgcaggaataccaggaaaaaaaggtttgctgggtattatgggtccacttggt
gcaaatggactgccaggagtgaagggagaaagaggggaagcaggtcctcaaggaccacca
actattgttatcgcagctcatgcttttaaaggaatggcaggtgataaaggattcttaggg
gaaatgggcccccgtggggacactggtattcggggcccacctggccttcctggtctagat
ggattaccagccatatttccaggtgagagaggcttaccaggagtactaggagaattgggc
cctaaaggttttcaaggtgagccaggttacccagctgctcaacctggtcctcctggacat
gcaggacaaaatggatctccagggctgcctggccaacctggactaaaaggaatttcaggt
tttactaggtttggagaaatgctgaaaggatctcaagggcttcctgggtttccaggcgtt
aatggttttcctggtcgcccaggggtaaaaggatttaaaggtagccctggagactgtgtg
tgtatatgcaatgaggcatgtggagaagctcctgctgggccacctggacatgtaggtctt
ccaggcctcccagggcagcctggaattaaaggcaagactggggaccagggaccctctgga
ccaacaggccccagtggtccacagggttttcctggtagcactggagaacaaggaccgaaa
ggacagacaggtgaacttgctattgctgtcaaaaaaggtgccaggggaaatcaaggtgat
agcatacaaggcgttcctggagaagatggcttgccaggaagggatggtatccctggtatt
ccaggtgatcgtggactccctggtgacggtacgaaaggcttcccaggtgacaaaggttta
ccaggtctacctggtgtaaaaggtgcccgaggagagattggtttgccaggtctaagcttt
tcaggtcctaaaggtgttcatggtactcaaggagacccaggattcgatggggttttagga
tatccaggtcctaaaggtcaaccaggtgactgttattgtggtgagaatattgatcagcat
ggtgttgggaaggagactgacacagccaaaacaggtgaaatctgtatatgttttggatcc
ctgggtcctccaggattatcaggtgtcccaggggctttaggtgctaaaggacatcaaggg
tcgccaggtccgcagggccgaagaggatatgatggtgtaaaaggtgtaccaggtgacaaa
gggctaggatttccaggactgccagggtttcctggaatacggggagacaagggacttgaa
ggcccacctggtttagagggtgttgtaggtgccccaggtaaactaggcgttccaggattg
aaaggtaaaaaaggagcaccaggggatgcactgggaatactgaagggttttccaggagaa
ccaggaccacctgggcacaagggcttgaagggtattcaaggagaccaaggactatatgga
tttaaaggaattgaggggatgccaggtatacgaggcctgaaaggtgaacgaggcccacca
ggtctaacaggtattccaggtatttcaggacttcgtggatcatatggatttccaggagca
caagggcaattaggcccaagtggcattgctggatttccaggtgccataggtcttcctggt
gataaaggtaaaagtggtgacataggccctcctggtcctcagggaatgaagggtcatcct
ggtgaagtaggagattcagggtcagtaggaggcataggtcacaaaggtgcccctgggctt
ccaggactgactgggattcctggtcgtcaaggtcttaaaggtttaaagggctctgttggc
gtgcctggcttccagggtatgacaggacctaaaggaaaacctggagtggaagggactaaa
ggaaagattggagaacctggttataagggagtaaaaggcacccaaggtcaacaaggcagc
aaaggaagccaaggtgaacgtggtttgccaggaaagtccctacacaatggactgctgtat
atgatgaagggtaccaaaggggacataggtttggagggtgtaaaaggatttactggacca
agaggtggtaaaggtatgccgggtattcctggtaaacctggtcagcctggcactgccgga
aactccagttttgagaaagggaagattggtgaggaaggtgttataggagttactggtatc
aaaggcttgcctggtcctgctggtcctcctggcattagtggctttccggggatgccagga
aacaggggtgataaaggtcttcaaggagctaaaggtcttccaggaaaaacaggttctgca
ggcgcagtaggcaccaaaggggaaagagtagacttacccggtgtaccaggaaacaggggg
aaagcaggtataccaggacaaccaggtgcaaagggagtcaaaggagaaacaggaggaaaa
ggagactcaggtttttcaggcattgaaggcatgaaaggattacggggtgaacctggtata
acaggacatacaggtttccctgggttactgggctcagcaggactccctggtctatcaggt
gaatctggccctcctggccaagcaggttcttcaggacagccaggactacccgggcgccca
ggttttctaggtatcaaaggtatagatggtcttgatggtttaccagggtctaaaggttct
aaaggatcaccaggcgcagataactggggaccaaaaggattccctggcaacccagggcaa
aaaggtgaaccaggaaaagcagctgctgagatgggcccaccaggagttccaggaggaaga
ggaatccctggagattatggtgaaccaggtccaatgggcatcccagggcctccaggtcct
cctggtcttccagcagattatgtcatccctggaattattggtgacccaggtcccacagga
ttagatggtgtaccaggctttcctggaccacaaggtcaacatggaaatgcatcctcacca
ggagagaagggaaatgcgggggaccctggaagaaccggagcaattggagaaaaaggaagc
acaggagacttgggacctctgggtttgcttggaattcctggattctctggacaaaaaggt
caacaaggtgaaccgggcttaatgggatttcctggcacggatggactaccaggtgacaga
ggaccttttggacccaagggcaatagtggacttccaggcctcaaaggacctccaggttcc
cctggacctcttcctacaccactgcctgtggtaaagccagttggatctcgtggccaacaa
ggaattcaaggaccatcaggagccactggtgcttcaggtccaaagggaccttcaggagac
aaaggttttatgggtccaccaggcaaacagggactgccaggcatcagtggcaggtctgct
aatccaggttatagaggagatcaagggtcagaagggcaaagagggccaacaggttttgag
ggtcttgctggtcgaacaggaccccctggattgccaggcatggcaggccgcagtattaat
gttggttatctgctagtgaagcacagccagtcatataacgtgccaatgtgtccagtgggt
atgaccaaactttgggatggatacagccttttctattttgaggggcaggaaaaagctcat
aatcaagacttaggactggctggatcatgcctacccaagtttagtactatgccatttctg
tactgtaaccctggagacatttgttattacgcaagtagaaatgacaaatcctactggctg
tccactactgcatcaattccaatgatgccggtggttgaagaagaaatcaagccatacatc
agtcgttgctctatctgtgaggctccttctcttgctattgctgtccacagtcaagatata
actatcccacagtgccctgctggatggcgcagtttatggattggttattccttcttaatg
catactggagctggtgatgaaggaggtggtcagtcccttgtctctcctggcagttgtcta
gaagatttccgtgccactccgttcattgaatgtgatggggctcgaggcagctgtcactac
tttgcaaacaagtatagtttctggctctctgcaatagaccagtcattccagagttcccct
ttaccagatacactcaaagcaggacagctccgaacgcacattagccgatgtcaagtctgc
atgaagaacttataa
DBGET
integrated database retrieval system
