Latimeria chalumnae (coelacanth): 102351071
Help
Entry
102351071 CDS
T02913
Symbol
COL4A2
Name
(RefSeq) collagen type IV alpha 2 chain
KO
K06237
collagen type IV alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04382
Cornified envelope formation
lcm04510
Focal adhesion
lcm04512
ECM-receptor interaction
lcm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102351071 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102351071 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102351071 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102351071 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcm04147
]
102351071 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
lcm00536
]
102351071 (COL4A2)
Exosome [BR:
lcm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102351071 (COL4A2)
Glycosaminoglycan binding proteins [BR:
lcm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102351071 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102351071
NCBI-ProteinID:
XP_005999453
Ensembl:
ENSLACG00000011050
LinkDB
All DBs
Position
Un
AA seq
1704 aa
AA seq
DB search
MQSSMERLQAKVQQSNQLRNLLWLLLLVASLIDVAQAGGKSDKGPCGGRDCSGGCQCFPE
KGGRGQPGLTGPQGRTGPPGVIGPPGLPGQKGEIGDSGQRGVPGPKGDVGSRGVPGFFGA
DGIPGHPGQPGPRGKPGHDGCNGTVGDLGSVGIPGNVGPTGLPGFQGPKGQKGEPFLVTI
EVERYRGEIGEPGVPGYPGVQGPHGPPGAIGQVGFPGLQGFPGPPGFPGPKGHMGIRFQG
EKGERGDVGLPGPPGILVLYDLKSPVLVKFKGSKGLSGQAGEKGEEGVMGFPGQRGEPGR
DGDAGIPGKKGLLGIMGPLGANGLPGVKGERGEAGPQGPPTIVIAAHAFKGMAGDKGFLG
EMGPRGDTGIRGPPGLPGLDGLPAIFPGERGLPGVLGELGPKGFQGEPGYPAAQPGPPGH
AGQNGSPGLPGQPGLKGISGFTRFGEMLKGSQGLPGFPGVNGFPGRPGVKGFKGSPGDCV
CICNEACGEAPAGPPGHVGLPGLPGQPGIKGKTGDQGPSGPTGPSGPQGFPGSTGEQGPK
GQTGELAIAVKKGARGNQGDSIQGVPGEDGLPGRDGIPGIPGDRGLPGDGTKGFPGDKGL
PGLPGVKGARGEIGLPGLSFSGPKGVHGTQGDPGFDGVLGYPGPKGQPGDCYCGENIDQH
GVGKETDTAKTGEICICFGSLGPPGLSGVPGALGAKGHQGSPGPQGRRGYDGVKGVPGDK
GLGFPGLPGFPGIRGDKGLEGPPGLEGVVGAPGKLGVPGLKGKKGAPGDALGILKGFPGE
PGPPGHKGLKGIQGDQGLYGFKGIEGMPGIRGLKGERGPPGLTGIPGISGLRGSYGFPGA
QGQLGPSGIAGFPGAIGLPGDKGKSGDIGPPGPQGMKGHPGEVGDSGSVGGIGHKGAPGL
PGLTGIPGRQGLKGLKGSVGVPGFQGMTGPKGKPGVEGTKGKIGEPGYKGVKGTQGQQGS
KGSQGERGLPGKSLHNGLLYMMKGTKGDIGLEGVKGFTGPRGGKGMPGIPGKPGQPGTAG
NSSFEKGKIGEEGVIGVTGIKGLPGPAGPPGISGFPGMPGNRGDKGLQGAKGLPGKTGSA
GAVGTKGERVDLPGVPGNRGKAGIPGQPGAKGVKGETGGKGDSGFSGIEGMKGLRGEPGI
TGHTGFPGLLGSAGLPGLSGESGPPGQAGSSGQPGLPGRPGFLGIKGIDGLDGLPGSKGS
KGSPGADNWGPKGFPGNPGQKGEPGKAAAEMGPPGVPGGRGIPGDYGEPGPMGIPGPPGP
PGLPADYVIPGIIGDPGPTGLDGVPGFPGPQGQHGNASSPGEKGNAGDPGRTGAIGEKGS
TGDLGPLGLLGIPGFSGQKGQQGEPGLMGFPGTDGLPGDRGPFGPKGNSGLPGLKGPPGS
PGPLPTPLPVVKPVGSRGQQGIQGPSGATGASGPKGPSGDKGFMGPPGKQGLPGISGRSA
NPGYRGDQGSEGQRGPTGFEGLAGRTGPPGLPGMAGRSINVGYLLVKHSQSYNVPMCPVG
MTKLWDGYSLFYFEGQEKAHNQDLGLAGSCLPKFSTMPFLYCNPGDICYYASRNDKSYWL
STTASIPMMPVVEEEIKPYISRCSICEAPSLAIAVHSQDITIPQCPAGWRSLWIGYSFLM
HTGAGDEGGGQSLVSPGSCLEDFRATPFIECDGARGSCHYFANKYSFWLSAIDQSFQSSP
LPDTLKAGQLRTHISRCQVCMKNL
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccagcatggaacgtttgcaagcgaaagtacagcaatcaaatcaattacggaac
ttattgtggctccttttactggtcgcaagtctgattgatgttgctcaagctggtggaaaa
tctgacaaagggccatgcggtggaagagactgtagtggtgggtgtcagtgctttcctgaa
aagggaggtcgaggccagccaggccttactgggcctcagggacgtactggaccaccagga
gttattggacccccaggtttacctggacagaaaggcgaaataggtgacagcggacaacgt
ggtgttcctggaccaaaaggagatgtgggatcaaggggtgttcctggattctttggtgca
gatggcattccagggcatccagggcagccaggaccaagagggaaaccaggtcacgatggt
tgcaatgggacagtaggagaccttggctccgtgggaataccaggaaatgtgggtccaacc
ggcttgcctggtttccaggggcccaaaggtcagaaaggtgaacctttcttagtgactatt
gaagtagaaaggtacaggggagagattggtgaaccaggagtaccaggctacccaggcgtt
caaggcccccatggtcctccaggtgcaataggtcaagtaggattcccaggactacaagga
tttccaggacctccaggatttccagggccaaaggggcacatgggaatacgttttcaggga
gaaaaaggagaaaggggtgatgttggtctaccaggccctcctggtattttagtactatac
gatttaaagtctcctgtattagtaaaattcaaaggaagcaagggactgagtggacaagca
ggagaaaaaggagaggaaggagttatgggatttccaggacaaaggggtgaacctggcaga
gatggagatgcaggaataccaggaaaaaaaggtttgctgggtattatgggtccacttggt
gcaaatggactgccaggagtgaagggagaaagaggggaagcaggtcctcaaggaccacca
actattgttatcgcagctcatgcttttaaaggaatggcaggtgataaaggattcttaggg
gaaatgggcccccgtggggacactggtattcggggcccacctggccttcctggtctagat
ggattaccagccatatttccaggtgagagaggcttaccaggagtactaggagaattgggc
cctaaaggttttcaaggtgagccaggttacccagctgctcaacctggtcctcctggacat
gcaggacaaaatggatctccagggctgcctggccaacctggactaaaaggaatttcaggt
tttactaggtttggagaaatgctgaaaggatctcaagggcttcctgggtttccaggcgtt
aatggttttcctggtcgcccaggggtaaaaggatttaaaggtagccctggagactgtgtg
tgtatatgcaatgaggcatgtggagaagctcctgctgggccacctggacatgtaggtctt
ccaggcctcccagggcagcctggaattaaaggcaagactggggaccagggaccctctgga
ccaacaggccccagtggtccacagggttttcctggtagcactggagaacaaggaccgaaa
ggacagacaggtgaacttgctattgctgtcaaaaaaggtgccaggggaaatcaaggtgat
agcatacaaggcgttcctggagaagatggcttgccaggaagggatggtatccctggtatt
ccaggtgatcgtggactccctggtgacggtacgaaaggcttcccaggtgacaaaggttta
ccaggtctacctggtgtaaaaggtgcccgaggagagattggtttgccaggtctaagcttt
tcaggtcctaaaggtgttcatggtactcaaggagacccaggattcgatggggttttagga
tatccaggtcctaaaggtcaaccaggtgactgttattgtggtgagaatattgatcagcat
ggtgttgggaaggagactgacacagccaaaacaggtgaaatctgtatatgttttggatcc
ctgggtcctccaggattatcaggtgtcccaggggctttaggtgctaaaggacatcaaggg
tcgccaggtccgcagggccgaagaggatatgatggtgtaaaaggtgtaccaggtgacaaa
gggctaggatttccaggactgccagggtttcctggaatacggggagacaagggacttgaa
ggcccacctggtttagagggtgttgtaggtgccccaggtaaactaggcgttccaggattg
aaaggtaaaaaaggagcaccaggggatgcactgggaatactgaagggttttccaggagaa
ccaggaccacctgggcacaagggcttgaagggtattcaaggagaccaaggactatatgga
tttaaaggaattgaggggatgccaggtatacgaggcctgaaaggtgaacgaggcccacca
ggtctaacaggtattccaggtatttcaggacttcgtggatcatatggatttccaggagca
caagggcaattaggcccaagtggcattgctggatttccaggtgccataggtcttcctggt
gataaaggtaaaagtggtgacataggccctcctggtcctcagggaatgaagggtcatcct
ggtgaagtaggagattcagggtcagtaggaggcataggtcacaaaggtgcccctgggctt
ccaggactgactgggattcctggtcgtcaaggtcttaaaggtttaaagggctctgttggc
gtgcctggcttccagggtatgacaggacctaaaggaaaacctggagtggaagggactaaa
ggaaagattggagaacctggttataagggagtaaaaggcacccaaggtcaacaaggcagc
aaaggaagccaaggtgaacgtggtttgccaggaaagtccctacacaatggactgctgtat
atgatgaagggtaccaaaggggacataggtttggagggtgtaaaaggatttactggacca
agaggtggtaaaggtatgccgggtattcctggtaaacctggtcagcctggcactgccgga
aactccagttttgagaaagggaagattggtgaggaaggtgttataggagttactggtatc
aaaggcttgcctggtcctgctggtcctcctggcattagtggctttccggggatgccagga
aacaggggtgataaaggtcttcaaggagctaaaggtcttccaggaaaaacaggttctgca
ggcgcagtaggcaccaaaggggaaagagtagacttacccggtgtaccaggaaacaggggg
aaagcaggtataccaggacaaccaggtgcaaagggagtcaaaggagaaacaggaggaaaa
ggagactcaggtttttcaggcattgaaggcatgaaaggattacggggtgaacctggtata
acaggacatacaggtttccctgggttactgggctcagcaggactccctggtctatcaggt
gaatctggccctcctggccaagcaggttcttcaggacagccaggactacccgggcgccca
ggttttctaggtatcaaaggtatagatggtcttgatggtttaccagggtctaaaggttct
aaaggatcaccaggcgcagataactggggaccaaaaggattccctggcaacccagggcaa
aaaggtgaaccaggaaaagcagctgctgagatgggcccaccaggagttccaggaggaaga
ggaatccctggagattatggtgaaccaggtccaatgggcatcccagggcctccaggtcct
cctggtcttccagcagattatgtcatccctggaattattggtgacccaggtcccacagga
ttagatggtgtaccaggctttcctggaccacaaggtcaacatggaaatgcatcctcacca
ggagagaagggaaatgcgggggaccctggaagaaccggagcaattggagaaaaaggaagc
acaggagacttgggacctctgggtttgcttggaattcctggattctctggacaaaaaggt
caacaaggtgaaccgggcttaatgggatttcctggcacggatggactaccaggtgacaga
ggaccttttggacccaagggcaatagtggacttccaggcctcaaaggacctccaggttcc
cctggacctcttcctacaccactgcctgtggtaaagccagttggatctcgtggccaacaa
ggaattcaaggaccatcaggagccactggtgcttcaggtccaaagggaccttcaggagac
aaaggttttatgggtccaccaggcaaacagggactgccaggcatcagtggcaggtctgct
aatccaggttatagaggagatcaagggtcagaagggcaaagagggccaacaggttttgag
ggtcttgctggtcgaacaggaccccctggattgccaggcatggcaggccgcagtattaat
gttggttatctgctagtgaagcacagccagtcatataacgtgccaatgtgtccagtgggt
atgaccaaactttgggatggatacagccttttctattttgaggggcaggaaaaagctcat
aatcaagacttaggactggctggatcatgcctacccaagtttagtactatgccatttctg
tactgtaaccctggagacatttgttattacgcaagtagaaatgacaaatcctactggctg
tccactactgcatcaattccaatgatgccggtggttgaagaagaaatcaagccatacatc
agtcgttgctctatctgtgaggctccttctcttgctattgctgtccacagtcaagatata
actatcccacagtgccctgctggatggcgcagtttatggattggttattccttcttaatg
catactggagctggtgatgaaggaggtggtcagtcccttgtctctcctggcagttgtcta
gaagatttccgtgccactccgttcattgaatgtgatggggctcgaggcagctgtcactac
tttgcaaacaagtatagtttctggctctctgcaatagaccagtcattccagagttcccct
ttaccagatacactcaaagcaggacagctccgaacgcacattagccgatgtcaagtctgc
atgaagaacttataa
DBGET
integrated database retrieval system
