Latimeria chalumnae (coelacanth): 102352700
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Entry
102352700 CDS
T02913
Symbol
COL11A1
Name
(RefSeq) collagen type XI alpha 1 chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102352700 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcm00536
]
102352700 (COL11A1)
Glycosaminoglycan binding proteins [BR:
lcm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102352700 (COL11A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
ConA_2nd_BAM2
BRI3
Motif
Other DBs
NCBI-GeneID:
102352700
NCBI-ProteinID:
XP_014349364
LinkDB
All DBs
Position
Un
AA seq
1871 aa
AA seq
DB search
MEMQRWSTRWKTKRWLWDSTLTTFITFTFVLQAANVRGAEPVDVLKVLEFHNAPEGIIKT
AGFCTNRRDSKGSDIAYRVEKHAQLSAPTRQLYPDGIFPEDFSILTTIKPKKGIQAFLLS
IYNDQGIQQLGIEVGRSPVFLYEDQNGKPAPEDYPLFRTVSIADNKWHRVAISVQQKNVT
IIVDCKKKITKPLGRSRNAVIDTDGITVFGTRILDEEVFEGDIQQLLIVGDPRAAYDYCE
HYSPDCDTPAPNAPQAQDPQVEEEYTTEDISEYDYEYWDGDYKETETITEETTQTEEAVT
QSEVNIVDETEDEYLVDENDYGTVDSYQTQAPINTAGPNEYQPLEEEFTEEYTTGEDYNL
ERKVPMENEFEAKEYDPSEYDLKEYDLKEYDLKEYDLKEYDLKEYDLKENDKVDYGDYYD
YDLKEHEERPTTSTREEFGPGVPAETDVSETNVNSNGFYGEKGQKGEPAVIEPVSKQKLM
KPSVSVLSICAPILMFPLEFKVLICLKKKKRKCEEGLPGPPGLQGPSGPPGDPGDRGPPG
RPGLPGADGLPGPPGTMLMLPFRFGGDGVKGPVVSAQEAQAQAILQQARLAMRGPPGPMG
LTGRPGPVGVPGIVGLKGEGGDPGPQGPRGVQGPPGLIGKPGKRGRPGADGARGLPGEPG
NKGDRGFDGLPGLPGEKGHRGELGPQGPPGPPGEDGERGEDGEVGPRGLPGDAGPRGLLG
PRGSPGAPGQPGVGGVDGPQGPKGNMGPQGEPGPSGQQGIPGPQGLPGPQGPIGPPGSKG
PQGKSGLPGLPGSDGPPGHPGKEGPPGEKGAQGPSGPQGPIGYPGPRGVKGADGVRGLKG
SKGEKGEDGFPGFKGDMGLKGDRGELGLLGPRGEDGPEGPKGRAGPMGESGASGPAGEKG
KLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGGRGPRG
PTGKPGAKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETG
FQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAGGKEGAKGDPGPAG
ASGKDGPPGLRGFPGERGLPGAQGPAGLKGGEGPQGPSGPVGSPGERGAAGNAGPIGLPG
RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEIGEPG
QKGSKGGKGEQGPPGPPGLQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGARGFPGPPG
PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGAIGSPGAVGEKG
EQGEAGNPGPPGEAGIGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPG
DPGPPGEPGPAGIDGVGGEKGDDGEAGQPGPPGPSGEAGPPGPPGKRGPPGSAGAEGRQG
EKGAKGEPGSEGPPGKTGPVGPQGPPGKQGPEGLRGIPGPVGEQGLPGSAGQDGPPGPIG
PPGLPGLKGDPGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDGGISGAAG
PLGPPGPPGLPGPQGPKGSKGSTGPVGQKGDGGLPGLPGPPGPPGEIIQPLPIQTPKKTR
RSSDDFQADASDNVLDYTDGMEEIFGSLNSLKQDIERMKYPMGTQNNPARTCKDLQLCHP
EFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEVVKISNWPKETPGSWFSEF
KRGQLLSYVDTEGNSINMVQMTFLKLLSASARQNFTYKCHQSVAWHDASSNNYDKALRFL
GSNDEEMSYDNNPFMKALYDGCALRNGYERTVIEINTPKIDQVPIIDVMMTDFGDPKQKF
GFEVGPVCFLG
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggctctgggattccact
ttaaccacattcatcacttttactttcgttcttcaggctgcaaatgtcagaggagctgaa
ccagttgacgtgctaaaagtattagaatttcacaatgcaccggaaggaattattaaaaca
gcaggattttgcacgaacagaagagactcaaaaggatcagacattgcttacagagtggag
aaacatgcgcagcttagtgctccaacaagacagttatatccagatggcattttccctgaa
gatttctctatcttaactacaattaaacctaaaaaagggatacaagcctttcttctatct
atctacaatgaccaaggtatccagcagctaggaatagaagttggtagatcccctgttttc
ttatatgaggaccaaaatggtaaacctgccccagaggactatcctctctttagaacagtc
agcattgctgataacaagtggcatcgggtagctatcagtgtacagcaaaaaaatgtgacc
atcatcgttgactgtaaaaagaaaataacaaaacctcttggcagaagtagaaatgcggtc
attgacactgatggtatcacggtctttggaaccagaattttggatgaagaagtttttgag
ggcgacatccagcaactgctgattgtaggtgaccccagagcagcctatgactactgtgag
cactacagccctgactgtgacacccctgcccctaatgctcctcaggctcaagatccacag
gtggaagaggagtacactactgaagacataagcgaatatgactatgagtattgggatgga
gactataaagaaactgagactataacagaggaaaccacacaaactgaagaagcagtaaca
caatctgaggtcaacattgtagatgaaacagaagatgaataccttgtagatgaaaatgat
tatggaactgtggatagttatcaaactcaagctcccattaatacagctggaccaaatgag
tatcagcctcttgaagaagaatttactgaagaatacactactggagaggattataatttg
gagagaaaagtacccatggaaaatgaatttgaagcaaaagaatatgatcccagtgaatat
gatcttaaggagtatgatcttaaagagtatgatcttaaggaatatgatcttaaagagtat
gatcttaaagagtatgatcttaaggaaaatgataaagtagattatggagattattatgat
tatgaccttaaagaacatgaagagagacctactacatccactagggaagaattcggtcct
ggtgtaccagctgagactgatgtatctgagaccaatgtaaatagcaacggtttctatgga
gaaaaaggacagaagggtgaacctgctgttatagaacctgtaagtaaacagaaacttatg
aaaccttcagtaagtgttctttctatatgtgcaccaattctaatgtttcctttagagttt
aaagtattaatttgtttaaaaaaaaaaaaaagaaaatgtgaggaaggtcttccaggccca
ccaggtttacagggtccctctggtcctcctggtgaccctggtgacaggggtccaccaggc
cgtcctggtcttccaggtgctgatggtttacctggtcctcctggtaccatgttgatgtta
ccgttccgttttggaggagatggtgtgaagggcccagttgtttctgctcaggaagctcag
gctcaggcaatccttcagcaggccagacttgctatgagaggtccccctggtccaatgggc
ctcactggcagaccaggtcctgtgggtgttcctggcattgtgggtcttaaaggtgaaggt
ggtgatccaggtcctcagggtcctcggggtgtccaaggtcctcctggcctaattggcaag
cctggaaaaaggggtcgtccaggtgctgatggtgctagaggcttaccaggagaacctggc
aacaagggtgacagaggatttgatggccttcctggtttgcctggtgaaaaaggtcatagg
ggagaactaggcccacaaggacctcctggcccacctggtgaagatggagaaagaggagaa
gatggagaggttggaccaagaggtctaccgggtgatgccggtcctcgtggattgcttggc
ccaagaggttctcctggcgcacctggacaacctggagtaggaggtgtagatggcccacaa
ggaccaaaaggaaatatgggtcctcaaggtgaacctgggccttctgggcagcagggaatt
ccaggcccacaaggtcttcctggtcctcaaggtcctattggccctcctggttcaaaagga
ccacaaggaaagtctggtcttcctggccttcctggttcagacgggcctcctggacatcct
gggaaggaaggtccacctggtgaaaagggagctcagggaccttcaggacctcagggccca
attggttatcctggaccccgtggtgtaaagggtgctgatggtgtccgtggtctcaagggc
tccaaaggtgaaaagggtgaagatgggttcccaggatttaaaggggatatgggccttaaa
ggtgacagaggagaacttggcctattgggtccaagaggtgaagatggccctgagggtcca
aaaggccgtgcaggtccaatgggtgagtcaggtgcttctggtcctgctggtgaaaagggt
aaacttggtgtacctggattaccaggatatccaggaaggcaaggtccaaagggctctact
ggtttcccaggattcccaggtgccaatggagagaagggtgcaaggggtgtagcaggcaaa
ccaggaccaaggggacaaagaggtccaacgggccctcgaggtgggcgaggtcctagaggt
ccaacaggaaagccaggtgctaagggcactgcaggaaatgatggtcctcccgggccacct
ggtgaaagaggacctcaaggccctcaggggccagttggattcccaggaccaaagggccca
cctggacctcctggtaaggatggattgcctggtcatccaggacagcggggtgaaactggt
ttccaaggcaagacaggtcctccaggcccgggtggtgttgtgggtcctcagggtcctact
ggtgaaactggcccaattggtgaaagaggtcatcctggtcctcctggccctcctggtgaa
caaggccttcctggagcaggaggaaaggaaggtgcaaagggtgacccaggtcctgcaggt
gcctctggtaaagatggtccaccaggccttcgtggtttccctggagaaagaggccttcca
ggtgctcagggtcccgctggtctaaaaggaggagaaggcccacaaggtccatcaggtcca
gttggttctccaggtgaacgtggtgctgctgggaatgctggcccaattggtctgccaggc
cgcccaggtcctcaaggtcctcctggccctgctggagagaaaggtgcccctggtgagaaa
ggtcctcaaggtccagccgggcgggatggagttcagggtccagtaggcctacctggtcca
gctggcccacagggtcctccaggtgaagatggtgataagggtgaaattggtgaaccaggt
cagaagggcagcaaaggtggcaagggtgaacaaggtcctcctggcccaccaggccttcaa
ggtcctgttggtgctcctggaccagctggagctgatggggagcctggtccaagaggtcaa
cagggtatgtttggccagaagggtgatgaaggcgcacgtggcttcccaggtcctccaggg
cctattggtctgcaaggtctccctggtccaccaggtgaaaaaggtgaaaatggtgatgtt
ggccctatgggtccacctggtcctccgggtccaagaggtcctcaaggtcccaacggtgct
gatggtccacaaggtcctccgggtgccattggctctcctggtgctgttggggagaaggga
gagcaaggtgaagctggtaacccaggtcctccaggagaagctgggattggcggtccaaaa
ggtgagaggggagaaaagggtgaagctggcccacctggcgccgctggtcctcccggtgcc
aaaggacctccaggagatgatggtccgaagggtaacccaggtcctgttggtttccctggt
gatcctgggcctcctggtgaacctggccctgctggtatagatggtgttgggggtgagaaa
ggagatgatggagaagctggtcaacctggtcctcctggtccatctggtgaagctggccca
cctggtcctcctggaaaaagaggtccacctggatcagctggtgcagagggaagacaaggt
gaaaagggtgcaaagggtgaacctggttctgaaggccctccaggaaagacaggcccagtt
ggcccacaaggtcctccgggaaaacaaggtccagagggtctccgtggtattccaggccct
gttggtgaacaaggtcttccaggatctgctgggcaagatggtcctcctggtccaattggt
ccacctggcttgcccggcctgaaaggcgatccaggtcctaagggtgaaaagggtcatcct
ggtttgattggtttaattggacctccaggtgagcaaggtgagaagggtgatagaggtctc
cctggtcctcaaggttctccaggtggtaagggtgatggtggcatttctggtgctgctggt
cctttaggcccacctggtcctcctggtctgcccggccctcaaggtccaaagggttctaag
ggatctacgggtcctgttggtcagaaaggtgatggaggtttaccaggtctacccggtcct
cctggccctccaggagagataatccagcctcttcctatccaaacgcctaaaaagacaaga
agatcatctgatgacttccaagctgatgcaagtgacaatgttttagactacaccgatggc
atggaagagatatttggttcactcaattctcttaaacaagacattgagcgcatgaagtat
ccaatgggcactcagaacaacccagcacgtacctgcaaagacttgcagctgtgtcaccca
gaatttcctgatggtgagtactggattgatccaaaccagggctgctctggtgactccttt
aaagtctattgcaacttcacatcaggtggtgaaacttgtatctacccagacaagaagtct
gaagtagtcaaaatttcaaactggcccaaggaaacaccaggatcttggtttagtgaattc
aaacgaggtcaactgctctcttacgtggatactgagggtaattcaattaacatggtccaa
atgacattccttaaactactgagtgcatctgctagacagaatttcacctataaatgtcac
cagtcagtggcttggcatgatgcatcatctaacaactatgacaaagcacttaggttcctg
ggatcaaatgatgaggagatgtcttatgacaacaatccattcatgaaagccctttatgat
ggttgtgcattgagaaatggctatgaaaggacagtgatcgagatcaatacacctaaaatt
gatcaagtacccatcatcgatgtaatgatgactgactttggtgatccaaaacagaaattt
ggttttgaagttggtcctgtctgtttccttggttaa
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integrated database retrieval system
