Latimeria chalumnae (coelacanth): 102353235
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Entry
102353235 CDS
T02913
Symbol
CHD8
Name
(RefSeq) chromodomain helicase DNA binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
102353235 (CHD8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcm03036
]
102353235 (CHD8)
Chromosome and associated proteins [BR:
lcm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102353235 (CHD8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Myb_DNA-bind_7
MUN
Motif
Other DBs
NCBI-GeneID:
102353235
NCBI-ProteinID:
XP_006005386
Ensembl:
ENSLACG00000011367
LinkDB
All DBs
Position
Un
AA seq
2529 aa
AA seq
DB search
MADPIMDLFDDPNLFGLDSLTEETFGQDGPDPIEDALCLPGGLEPLDHVTPTIGNTVAPQ
TTPSQQELVSATVMQPQNAGSLTLHDYISQQSATPSLSTPQNPDTIGQPSKGQEALSQGN
PFMGVTTVTSTAPPSVKPQPKIIIVKTQASGSMGSASQGVLQPVTSILGPGQTVGQVAAN
GGKVSIAKVLTGTPLRPGVSIVSGNAVLATKVAGGGQPMAGVQRIVQQNGPVKQLILQPV
TTQQAQGTTVTSSSGSPLKPGITVTSASPAQGEPKRITLVLQQPQMGGQPGQRHVLLGNL
PGKIFLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQQKIQLVQQALGQGQFQPGQRL
AVPLKVLLQPQAGSSQGSTSGLSVVKVLNACEVAAVGGATSHGELGETRKMEHQKKQEKA
NRIVAEAIARAKARGEQNIPRVLNEDELPTVRPDGEADKKKKKKTGGGGAMGERLKEEKP
KKLKTGGCSKSKSKSKPNTITPVVGKKRKRNPSSDNSDAELTPPVSPKEDEETTQKRRSN
RQVKRKKYTEDLDIKITDDEEEEVDVTGPVKPEPIPEPVPEPDVEENVPSMQFFVENPSE
EDAAIVDKILSVRLSKKELSPGHYMDVEEFFVKYKNYSYLHCEWATIQQLERDKRIHQKI
KRFKTKMAQMRLLFHEDEDPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYED
STWELKEDVDEAKVAEFKRIQARKPEIKRVARPLSSVWKKLELSREYKNGNSLREYQLEG
VNWLLFNWYNRQNCILADEMGLGKTIQSITFLQEVYSVGVRGPFLVIAPLSTITNWEREF
CTWTDMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMVLSDCPELR
EIEWRCVIIDEAHRLKNRNCKLLDSLKHLDLEHKVLLTGTPLQNTVEELFSLLHFLDPSQ
FPSESEFLKDFGDLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTNVQK
KYYRAILEKNFTFLSKGAGQANMPNLLNTMMELRKCCNHPYLINGAEEKILAESRERYDP
MAPDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQKRYQFER
IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ
AQARCHRIGQSKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSSGSKEGGVNGVQ
QFSKKEIEDLLRKGAYAAIMDEDDEGSKFCEEDIDQILQRRTTTITIESEGKGSTFAKAS
FVASENRTDIALDDPNFWQKWAKKADIDMDSLGSKNNLVLDTPRVRKQTRHFSTLKDDDM
VDFTDMDSDEDDRPRSRRYDRHHGYGRTDCFRVEKHLLVYGWGRWKDILAHGRFKRRMLE
RDIETICRTILVYCLLHYKGDENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGK
KVKSQSTFDIHKADWIRKYNPDTLFTDDSYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQA
EKVMEGAEASEIDIWFPEMDQLEVPSDWWDSNSDKSLLIGVFKHGYEKYNTMRADPALCF
LDRVGRPDEKAIAAEQRGTDNFGDLGEGLDFEKDSEDPEYRPIHGMGKDEEEVDMLMDEE
ISVVDGDEKYVPQPGARYWPPASALTARLRRLVTAFQRSYKREQMRIEAAEKGDRRRRRC
EAAFKLKEIARREKQQRWTRREEADFYRVVSTFGVEFDPDAREFHWNRFRSFARLEKKTN
ESLTKYFQGFVAMCRRVCGLPPCEGEEYPDPMLFVEPITEERASRTLYRIDLLRRVREQV
LRHPQLDERLQLSQPGPELPEWWECGRHDRELLLGVARHGVSRTDYAIMRDPEFSFLAAH
IAYLQSRPVQSRCSTPLLHHQYASRTASPLTLRPDTTEKRPESVGVRLEDELAVKLEAEG
LLVDQTVALPTVGEVASGALLGLSPHLKTSPTFLKKEGNSGEETDSDSELEKFSFSPSSS
NPSSLSESSDDEKECKLNVAGMLPQSKLYDEESVLSLNASQDSFPNEDIEPTTLELLTER
QRSSDWPKDRVLINRIDNLCQLVLTGKWPPSRRVHFEGMAAAAALGLPSGATRLMDSPLL
SGEYGDSPVATPASFSLEDDTATAAAAAMAQFTKLRKSTDEKEFTVRIKEDEGIKLTIQK
HKLLVNGALPMGYPLLKKKKRRKRSQQVDGERVGDSPMRGADLEPDSRIPVVSKVDGTVL
VGEEAPSRAELDQWLRERPEYEVDPRFLAYLDDRQRRRRHRYKPQAQVDLNNLTGMERVQ
LVNTLTGRKLGGAIAPLLKDLKRCLEDNPHYVVSPKWGEAVKHSGFLPESMFDRILMGPD
ESEEIRKSISKRPKNSTLPNMAAQVQPNPLLAATDPNPFQAFHRTLPPAGMMGHANMATT
LPIMQFGSPPGLDSRMFLHRGVGAPAETLEEVEVGAEDLTQDFESSDERDFSLMGDPMMP
THSDSSEDD
NT seq
7590 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctttttgatgacccaaacctctttggactagactctctg
acggaggagaccttcggtcaagatggtcctgaccctattgaagatgcgctgtgcctgccc
gggggcttagagcctcttgatcatgtgactccgacaatagggaacacggtagccccacaa
accacgccatcgcagcaggagttagtcagtgccactgtcatgcaaccacaaaacgcaggc
tcattgacgctccatgactacataagtcaacagtcagctactccatcactgtctaccccc
caaaatccagacacaataggccagccctccaaaggacaggaggcactgagtcagggcaac
ccatttatgggggtcacaactgtaacctcaacagctcccccgagtgttaagcctcaaccc
aaaatcatcatagtgaagacgcaagcctcgggaagtatgggctctgcaagccaaggggtt
cttcagccagtcacgagtattctagggccagggcagactgtaggccaggtggctgctaat
gggggcaaggtgagcattgccaaggtgttgacgggcaccccgttgcggccgggggtgtcg
attgtgtcagggaatgcagtgctggccacaaaggtggcaggaggcgggcagccaatggcg
ggggtgcagcggattgtgcagcagaatgggccagtgaaacagctgatcctgcagccagtg
acgacccaacaagctcagggaaccacggtcacctcatccagcgggtcaccgctaaaaccc
ggaataacggtgacatctgcgagcccagcacagggtgaaccgaagagaataactctggtc
ctgcagcagccacagatggggggccagccgggccaacggcacgtgctgctcggcaacctc
cctgggaagatcttccttcagggcaatcagctagcagccctgacacaggccaagaatgct
cagggccagccggccaaggtggtgaccatccagctccaggtacagcagccacagcaacag
aagatccagctggtgcagcaggccctggggcaggggcaattccagcccgggcagaggctt
gccgtacccctcaaagtcctcttacagccccaggcggggtcctcgcaggggtccacctcg
gggctgtcagtggtgaaggtgctgaatgcatgcgaggtggcggcagttgggggggcaact
agccacggtgagctgggcgagactcgtaagatggagcaccagaagaagcaggagaaggcc
aaccggattgtggcggaggccatcgctcgggccaaggcgcgaggcgagcagaatatcccc
cgtgtcctgaatgaggacgagctgcccaccgtcaggccagacggtgaagctgacaagaag
aagaagaagaaaactggtggtgggggtgctatgggagagcggctcaaagaggagaaaccc
aagaagctgaaaacaggcggctgttccaaatctaaaagcaaatcaaaaccaaacaccatc
acccccgttgtcgggaagaagcggaaacggaacccctcatctgataactctgatgcagaa
ctgactcctcctgtttctcccaaggaggatgaagagaccacccagaagagacgttccaat
cgacaggtcaagcggaaaaagtatacagaggatctggatattaaaatcacagatgatgag
gaagaggaggtggatgtgactgggcccgtcaagccagagccaatcccggagccagtgcct
gagccagacgtggaagagaatgtgccctccatgcagttctttgtggaaaatccaagtgaa
gaggatgcagccatagtggataaaatactttctgtccgactgtccaagaaggagttgtct
ccaggtcattacatggatgtggaagaattttttgtcaaatacaaaaactattcctatctg
cactgtgagtgggccactatccaacagctagagagagacaagaggatccaccagaagatc
aaacgcttcaaaaccaagatggcacagatgaggctcctcttccatgaggatgaagacccc
tttaatccagactatgtggaggtggaccgaatcctggacgaatctcacagtatagataag
gataacggagagcctgtaatttactacctggtgaagtggtgctcccttccatatgaggac
agcacatgggagctgaaggaggatgtggacgaggcaaaagttgcagagttcaaacgcatc
caggctcggaaacccgagataaagagagtggccagacctctctcgagcgtgtggaaaaag
ctggaactgtcccgggagtataagaatgggaatagccttcgtgaataccagttggaagga
gttaactggcttctcttcaattggtacaacaggcagaactgtatcctggcagacgagatg
gggctggggaagacgatccagtccatcactttcttgcaggaggtttacagcgttggggta
cgtggccccttccttgtcatcgccccgctctccaccatcaccaactgggagcgagagttc
tgcacctggaccgacatgaacaccattgtctaccatggcagcttggccagccgccagatg
atccagcaatatgagatgtactgcaaggactccaggggccgtctgatcccgggggcatat
aagtttgatgcgctgatcaccacctttgagatggttctatctgactgccccgagctacgg
gagatcgagtggcgctgtgtgataattgatgaggctcatcggctaaagaaccgcaactgt
aaactgctggacagcctgaaacatctggatctggaacacaaggtgctgctgactgggacc
cccctccagaacactgtggaggaactcttcagccttcttcacttcctggacccctcccaa
ttcccttcagagtcagagttcctcaaggactttggagacctcaaaacggaggagcaggtt
cagaagttgcagtccatcctgaagcccatgatgctgcggcgactgaaggaggacgtggag
aagaacttggcgccaaagcaggagaccatcattgaggtggagctgacaaatgtgcagaag
aagtactaccgagccatcctggaaaagaacttcaccttcctgtccaagggggccggccag
gccaacatgcccaacctgctgaacaccatgatggagctgcgcaagtgctgtaaccacccc
tatctgatcaacggtgcggaagagaagatcctggcagagtcccgggagcgctatgaccca
atggcaccagatttccacctgcaggccatggtgcgctcggcaggaaagctggtcctgatt
gacaagctgctaccaaagctgaaggctggtggacacaaggtgcttatcttctcccagatg
gtgcgctgcctggacatcctggaggactacctaatccagaaaaggtaccagtttgaaagg
attgatgggcgcgtgcgggggaacctgagacaggctgccattgaccgtttcagcaagcca
gattcggatcgttttgtcttcctgctgtgcacccgggcgggggggctgggcatcaacctg
acagccgccgacacctgcatcatctttgactcggactggaacccccagaatgacctgcaa
gcgcaggctcgctgccaccgaatcggacaaagcaaagcggtgaaggtgtaccgactgata
acgcgcaactcatatgagagggagatgttcgacagggccagcctgaagctgggattggac
aaggctgttttacagtccatgagcagcggaagcaaggagggcggtgtaaatggggtgcag
cagttttcaaagaaggagattgaagacctgctgcggaagggagcctacgccgccatcatg
gacgaagacgatgagggctccaagttttgcgaggaggacatcgaccagatccttcagcgg
cgtaccaccaccatcaccatcgagtccgagggtaaagggtccaccttcgccaaggcaagt
tttgtggcatcagagaacaggacagacatcgccctggatgatcccaacttctggcagaag
tgggccaaaaaggcagacattgatatggattccctcggcagtaagaacaatctggtactt
gatacaccccgggttcgcaagcagacccgccacttcagcaccctgaaggatgacgacatg
gtggacttcacagatatggacagcgatgaggatgaccggccccgctcccgacgctatgac
cgccatcatggatacgggcgcaccgactgcttccgggtggagaagcacctgctggtttat
gggtgggggcgctggaaggacatccttgctcatggacgcttcaagcggcggatgttggag
cgggacattgagacgatctgtcgcaccatcctggtatattgcctgctccactacaagggt
gatgagaacattaagggcttcatctgggacctcatctctcctgcagagaacggcaagacc
aaggagttacagaaccactcaggtctgtcgatcccggttccaagagggcggaaaggaaag
aaagtaaagagtcagagcaccttcgatatccacaaagcagactggattcgcaagtacaat
ccggacacgctcttcacggatgacagctacaagaagcaccttaagcaccagtgtaacaag
gtgttgctgagagtgaggatgctttactacctcagacaggaggtgatcggggaccaggca
gagaaggtcatggaaggagctgaggcaagtgagattgacatctggtttccagagatggac
caattagaagtgccttcagactggtgggacagcaactcggacaaatccctccttatcggg
gtcttcaaacacggctatgagaaatacaacaccatgagggcagaccccgcgctgtgcttc
cttgaccgagtcggacgtcctgacgagaaggcaatagcagctgagcagaggggaacggac
aacttcggtgacctcggggagggcttggattttgagaaggacagtgaggacccagaatac
agacccatccatggcatgggcaaagacgaagaagaggttgacatgctgatggatgaagaa
atatctgtggtggatggagatgaaaagtatgtgccgcaaccgggggctcgctactggccg
cccgcctctgccctgaccgcccgcctgcgacgcctggtcactgccttccagcgcagctac
aagcgggaacagatgaggattgaggcggcggagaagggtgaccggcgccgacggcgctgt
gaagctgctttcaaactgaaggagatcgccagacgtgagaaacagcagaggtggacacgg
cgagaggaggcagatttctaccgggtggtgtcaacattcggggtggagttcgacccagat
gcccgggagttccactggaaccggttccgaagctttgcccgactggagaagaagactaat
gaaagccttaccaagtacttccagggcttcgtggccatgtgccggcgtgtatgcggactg
ccaccttgcgaaggggaagagtaccctgaccccatgctgtttgtcgagccaatcacagag
gagcgggcatcacggacactataccggatagatctcttgcggcgggtgcgtgagcaggtt
ctgcgccaccctcagttggacgagcggctgcagctgagccagccaggccctgagcttcct
gagtggtgggagtgtggccgacacgaccgcgagctcctgctgggcgtggcacggcatggt
gtgagccgtactgactatgctatcatgagggacccagagttctcattcctggctgcccac
atcgcctacctccagagccggcccgtccaatcccgctgctccaccccactcctgcaccac
cagtacgcctcccgcacggcctcaccgctgaccctgcggccggacaccacagagaagcga
cctgagtcggtaggcgtgaggctagaggacgagttggcggtcaagctggaagctgagggc
ttgctggtggatcagacggtggcgctgcctacggtgggtgaggtcgcatccggggccctg
ctagggctcagccctcatctaaaaacatcccccactttcctgaagaaagaaggcaactct
ggggaagagacggactctgattcagaattggagaaattctcattctctccttcttcctcc
aatccctccagcttgtcggagagcagtgatgatgagaaggagtgcaagttaaatgttgct
ggcatgttgccccagtccaagctttatgatgaggagagtgtgctctcactaaacgcgtcc
caggacagcttcccgaacgaggacattgagccaaccaccttggagctgcttacagagagg
cagaggtcatcggactggccaaaggatcgagtcctgatcaatcggatcgataacctgtgc
cagctggtgctgacggggaagtggccaccaagtcggcgggtgcactttgagggcatggct
gctgctgcggctctggggctcccgtccggggccactcggctgatggatagtccactgcta
tctggtgaatatggagactcgcctgtagccacgcctgccagcttttctttggaggatgac
accgctacagctgctgccgctgccatggcgcagtttacgaagttacggaaaagcacagat
gagaaggagttcactgttcggataaaagaggatgaggggataaaactgaccatccagaaa
cacaagctgctggtgaacggagcccttccaatggggtatcccttgcttaaaaagaagaaa
cggagaaagaggagccagcaggtggatggagagcgtgtaggggattccccaatgcgcggg
gcagacttggagccagactctcggattccagtggtcagtaaggtggacggcacggtgcta
gtgggggaggaagcccccagtagggctgaactggaccagtggctgagggagcggcccgaa
tacgaggtggaccccagatttttagcatatttggacgatcggcagaggcggcggcgccat
cggtacaagccccaggcgcaagtggacctgaataacctaacagggatggagcgcgtgcag
ctagtcaacacgctcactggcaggaagctgggtggggccattgctcctcttcttaaggac
ctgaagagatgtttggaagacaatcctcactatgttgtctcacccaagtggggtgaagca
gtcaaacactcgggtttcttaccagagtccatgtttgaccgaatcctaatgggaccagat
gagagcgaggagattcggaaaagcatcagcaagcgacctaaaaacagtactcttcccaac
atggcagcccaggtgcagccgaacccactattggcagccacggacccaaatcccttccaa
gccttccacaggaccctgcccccagcgggtatgatgggccatgccaacatggccaccacc
ttacccatcatgcagttcggcagccccccagggctggactcccggatgttcctccaccgg
ggggtgggagcaccggcagagaccctggaggaggtggaggtaggggctgaagatttgact
caggactttgaaagctcagatgagagagacttctctctaatgggggaccccatgatgcca
actcactccgattccagcgaggacgactga
DBGET
integrated database retrieval system
