Latimeria chalumnae (coelacanth): 102354080
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Entry
102354080 CDS
T02913
Symbol
SCAF4
Name
(RefSeq) SR-related CTD associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcm03021
]
102354080 (SCAF4)
03041 Spliceosome [BR:
lcm03041
]
102354080 (SCAF4)
Transcription machinery [BR:
lcm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102354080 (SCAF4)
Spliceosome [BR:
lcm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
102354080 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
XMAP215_CLASP_TOG
Motif
Other DBs
NCBI-GeneID:
102354080
NCBI-ProteinID:
XP_006002006
Ensembl:
ENSLACG00000013913
LinkDB
All DBs
Position
Un
AA seq
1059 aa
AA seq
DB search
MDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKAEYKVPGLYVIDSIVRQSR
HQFGADKDVFGPRFSKNITSTFQNLYLCPSEEKSKIVRVLNLWQKNGVFKIEIIQPLLDM
AAGASSAAPQVMENTTNNADSPPPPVKVPAEPPPVQVTPPPQIAANSVPPIPPVPQLPTP
DAFAAVAQLFQSTQGQQLQQILQTFQQPPKSQSPVVDNNVLAQVQAITTQLPTTTAQPVE
QKATFDKKLLDRFDYDDEPEATEDAKKEDSTPSPTQLPFGFPGEGVQPPMYPQLPPGQLQ
NMEPFQQRMLVMQQDSLRPQVPLPPNGQMPGFGLLPTPPFPAMAQPAVAPVPPVQPVFQP
AFQPQTEVITQQTQQQQDVTLEVEQPCVPENKRHSTENRRSRSRSASSRSPKRRRSRSGS
RSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPSIKPETVSVCSTTLWI
GQLDKRTTQQDVASHLEEFGAIESINMIPPRGCAYIVMVHRHDAYRALQKLSRGGYKINL
KSIKIAWALNKGIKPDIKQYWDVDLGVTYIPWDKVKPEELASFCEGGILDNDTLCPDWKD
IPKKPENAEVAQNGGSEALPVEEPLPVAIPAPVVPPAQVPGVQPMPPVSPLQPPAFSGPL
GIPPPGFAPGMPPPPPPQFLRPGFNPLQLPPGFLPPPSALPPMSSAAPIPPSPGANIQTS
ATASATEDPSKDSAVGNPIPTVVSGPRGNSESAESTKLFGSVAAVGAANLPPSLAQPFSV
MGAPPGTAAGAVIGSQPPSTGLLGARPGLIPLQRPPGIPPPHLQRFPLLPPRPNMPVPPH
LLHRGPPPGPGGFGMPPPHGIRAPFPPHNPFIRVGGPGVLGGPDDREGRQFRNDRQGFPP
GRDRDRDQERFGRRPFGNRGENDSRDRYGNRHNDRDHERPSGRERREWGRSPEHERPRDL
EERSRQSNRHQNRDRDSRDRESRRDREENRGKEKPETGDAESSTKKYESNSNVKADDVTE
LTKEEPESTSLKQKTEELPSEPTSSAKSAEDDSDVLEQA
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggacatgaagccacctatctcacgagccaagatgatcttaattacaaaggctgccatc
aaagctataaagctgtacaaacatgtagttcagattgtagagaagttcattaagaagtgc
aaagctgaatataaagttccaggattatatgtcattgattctattgtccgccagtcacgt
catcaatttggagctgataaagacgtttttgggccaaggttctcgaaaaatatcacatcc
acattccaaaatttatatctctgcccatctgaagagaagagtaaaatagttcgagtgttg
aatctctggcaaaaaaatggcgtctttaaaattgagattatacaacccctgctggatatg
gcagcaggagcaagcagtgctgccccacaggtgatggaaaataccactaacaatgcagat
tctcctccgcctccagtaaaggttccagcagagccccctcctgtccaggttacaccacca
cctcagattgctgctaactctgttcccccaatacctccggtaccacagctgcccacccct
gatgcctttgcagccgtagctcagctttttcaatcaacccaaggacaacagcttcagcag
attcttcagacttttcagcagcctccgaagtcacagtctccagtagtcgacaataatgta
cttgcacaggttcaggctattactacccagctgccgaccaccacagcccaaccagtagaa
caaaaagctacttttgataagaagctgcttgataggtttgactatgacgatgaacctgag
gctacagaagatgcaaaaaaagaggattcaactccatcgccaactcagcttccatttgga
ttcccaggagaaggtgtacagccacccatgtatcctcagcttccaccagggcagctccaa
aacatggaaccatttcagcaaagaatgctagtgatgcagcaggactcactgcgtccccag
gttcctcttcctcccaacggccagatgccagggtttggactcctgcccacgccacctttt
ccagctatggctcaacctgctgtagctccggtaccacctgtacagcctgtttttcaacca
gctttccagccacagaccgaagtaattacacagcaaacacagcagcagcaagatgtaact
ctggaagttgagcagccctgtgtgccagaaaataagcgccattctactgagaacaggagg
tcacggtccaggtctgcatcaagccgatcacccaagaggagacgttctagatctggctct
cggtctcgacgatcacgacaccgacgttctcgctcaagatcccgagacagacggaggcat
tctccacggtcacggtcgcaggagaggcgtgaccgagaaaaagagagggaacgcagacaa
aaaggccttccttctataaaacctgagactgttagcgtttgtagtactacactctggata
ggacagctggataagaggactacccagcaagatgttgcaagtcatttggaggagtttggt
gcaattgagtctataaatatgattcctccaagagggtgtgcctatattgtaatggtccac
agacatgacgcttatagagctttgcagaaactgagcagaggtggctacaaaataaatctg
aagtctataaagattgcatgggccttaaacaaaggaattaaacctgatattaaacaatat
tgggatgtagacctgggagttacctatattccatgggataaggtaaaacctgaagagctg
gcaagcttctgcgaaggagggattttggacaatgatacactgtgtccagactggaaggat
attccaaagaagcctgaaaatgcagaagtagctcaaaacggaggctctgaagctttgccg
gttgaagaacctttgcctgtagctattcctgcgcctgtggttccacctgcacaggttcca
ggagttcagcctatgcctccagttagtcctctccagccacctgctttctcagggccttta
ggaattcctcctccgggttttgcccctggcatgccccctccgcctccacctcagtttctg
cggcctggattcaacccacttcagttaccaccagggttccttcctcctcctagtgctttg
cctccaatgagttcagcagcacccattcctcccagtccaggagcaaacattcaaacctct
gctacagccagtgcaacagaagaccctagtaaagattctgcagtgggaaaccccattcca
actgtggtttctgggccaagaggtaattcggaatctgctgaaagtactaaattgttcggt
tctgttgcagctgtgggagctgccaacctaccgccctctctagcacaacctttttcagtc
atgggggcaccaccaggaactgcagctggtgcagtgattggttcacagccaccctctact
ggtctactcggggcacgtcctggtttaattcccttacagcggcctccaggaattccacca
cctcatttacaaagatttcccttgcttccacctcgtccaaatatgcccgtgccgccacat
cttctacatagaggtcctcctcctgggccaggaggctttggaatgcctccacctcatggt
attcgagctccctttccacctcataacccatttattagggtgggaggtcctggagtactg
ggaggacctgatgatagagaaggaaggcagtttaggaatgataggcaaggatttccgcct
ggtagagatcgagatcgagatcaagaaaggttcggaagacggccttttgggaaccggggg
gaaaatgatagccgtgatcgttatggtaatcgccacaacgacagagatcatgagcgtccc
agcggccgtgagagaagggaatgggggagaagtccagagcatgaaaggccaagagacttg
gaggagagaagtaggcagtcaaacagacatcagaacagagaccgggattctagagaccgg
gagtctcgtagagacagagaggaaaatcgtgggaaggaaaagcctgagacgggagatgca
gaaagtagtactaaaaaatatgaatctaatagcaacgtaaaagcagacgatgtgacagaa
cttactaaggaagagcctgaatccacaagcttgaaacaaaaaactgaggagttgccatct
gagcctacctcatctgcaaaatcagcagaagatgattcagatgtactggaacaggcttag
DBGET
integrated database retrieval system
