KEGG   Latimeria chalumnae (coelacanth): 102354114
Entry
102354114         CDS       T02913                                 
Symbol
YBX1
Name
(RefSeq) Y-box binding protein 1
  KO
K09276  Y-box-binding protein 1
Organism
lcm  Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lcm03000]
    102354114 (YBX1)
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102354114 (YBX1)
   03041 Spliceosome [BR:lcm03041]
    102354114 (YBX1)
Transcription factors [BR:lcm03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   Cold-shock domain factors, YB-1/DbpB-like
    102354114 (YBX1)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Other mRNA localization factors
     102354114 (YBX1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102354114 (YBX1)
Spliceosome [BR:lcm03041]
 Common components
  Common spliceosomal components
   General mRNP proteins
    102354114 (YBX1)
SSDB
Motif
Pfam: CSD OB_RNB S1CSD-TOTE-2
Other DBs
NCBI-GeneID: 102354114
NCBI-ProteinID: XP_005988757
Ensembl: ENSLACG00000018135
UniProt: H3BFG7
LinkDB
Position
Un
AA seq 303 aa
MSSEAETQPQSPAAESKPSPAAAANAGEKKVIATKVLGTVKWFNVRNGYGFINRNDTKED
VFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRN
TYRRYPRRRGPPRNYQQNYQTVEGGDKSEGTESAEGENKPQERRPYRRRRYPPYYMRRPY
WRRLQYSNPPPPGELVEGDENNQGANEQGTRPPRPNMYRGYRPRFRRGPPRPRQPREGDN
EEDKENQGDGAQNQPRPRQYRRNFNYRRRRPQNPKPQDGKENKAAEPSAENTSAPEAEQG
GAE
NT seq 912 nt   +upstreamnt  +downstreamnt
atgagcagcgaggccgaaacacagccgcagtctcccgccgcggagagcaaacctagtccg
gcagcggcggctaacgcgggggaaaagaaggtcatcgcaacgaaagtcttgggaacagtg
aaatggttcaacgttagaaatggctacggattcatcaacaggaatgacaccaaggaagat
gtgtttgtacaccagactgccattaagaagaataatcctcggaagtatctgcgcagtgtg
ggggatggagaaactgtggagtttgatgtggtggaaggagaaaagggtgcagaggcagcc
aatgtcactggtcctggtggagttccagttcaaggaagcaagtatgcagcagaccgcaac
acatataggcgctatccccgtcgcaggggtcctcctcgcaattaccagcagaattaccaa
actgtagaaggtggtgataagagcgagggcacagagagtgcagagggtgagaataagccc
caggaacgtcgcccataccgtaggagacgttacccaccttactacatgcgtagaccctat
tggcgccgcctgcagtactccaacccaccacctccaggagagttagttgagggtgatgaa
aataaccaaggtgctaacgaacaaggcactaggccaccaagaccgaacatgtaccgaggt
tacagaccacggttccgcaggggaccccctcgtccaagacaacctagggagggagacaat
gaagaggataaggagaatcagggtgatggggcccagaatcaaccacgcccacgccagtac
cgccgcaacttcaactatcggcgcaggcgccctcagaaccctaaaccacaagatggcaaa
gagaacaaggcagccgaaccatcagctgaaaacacgtctgctcccgaggccgagcagggt
ggggctgagtaa

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