Latimeria chalumnae (coelacanth): 102354339
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Entry
102354339 CDS
T02913
Symbol
COPA
Name
(RefSeq) coatomer protein complex subunit alpha
KO
K05236
coatomer subunit alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcm04131
]
102354339 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcm04147
]
102354339 (COPA)
Membrane trafficking [BR:
lcm04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
102354339 (COPA)
Exosome [BR:
lcm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102354339 (COPA)
Exosomal proteins of bladder cancer cells
102354339 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_RFWD3
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
102354339
NCBI-ProteinID:
XP_006001923
Ensembl:
ENSLACG00000008855
UniProt:
H3AK74
LinkDB
All DBs
Position
Un
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSSSDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRIWDISGLRKKNLSPGAVETD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLTAH
TNLNLFAAGHDSGMIVFKLERERPAYAVYGNILYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRASNLENSTYDLYTIPKDSDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDSDSITLFDVQQK
RSLASVKISKVKYVIWSSDMSHVALLSKHAILICNRKLDSLCNIHENIRVKSGAWDESGV
FLYTTSNHIKYALTTGDHGIIRTLDLPIYVTRVKGNSVYCLDRECRPRVLTIDPTEFKFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFGLALECGNIEI
ALEAAKALDDRNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEDAEALKASFDP
EKETIPEIDPNAQLLQPPPPIMPLDTNWPLLTVTKGFFEGAIASKGKGGHMAADIDIDTV
GGEGWGEDAELQLDEDGFVDAGEGFGEDGVGKGQEEGGGWDVEEDLELPPELDISLGPAG
GSEEGFFVPPTKGVSPTQTWCNNSQLPADHILAGSFETAMRLLHDQVGVVNFGPYKQLFM
QTYSRGRSVYQALPALPSMFGYPQRNWKEAGLKNGVPAVGLKLNDLIQRLQLCYQLTTSG
KFEDAVEKFRLILLSVPLLVVDNKQEISEAQQLISICREYIVGLSMEIERKKLPKDTLDQ
QKRICEMAAYFTHSNLQPVHMILVLRTAVNLFFKLKNFKTAAAFARRLLELGPKPEVGQQ
TRKILAACEKNLTDTQQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYIPEFKGQI
CYVTTVTEVGKDVIGLRVSPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaaatttgagaccaagtcggcccgagtgaaaggtctgagtttccacccaaag
cggccctggatcctggccagtcttcataatggggtgatccagctctgggattaccgcatg
tgcaccctcattgacaagtttgatgagcatgacgggcctgttcgaggaattgatttccac
aagcagcagcctctctttgtgtctggaggggatgattacaagatcaaggtgtggaactat
aaactgcgtcgctgtttgtttacgctgcttggacacctggactacattcgcaccaccttc
tttcaccacgagtatccctggatcctgagttcttccgatgaccagacaatcagagtttgg
aactggcagtcccgcacctgtgtttgtgtgttgactggacacaaccactacgtgatgtgt
gcgcagttccacccctcggaggacctggtggtgtcggccagcttggatcagactgttcgc
atctgggatatttctggattaaggaagaagaacctctccccaggtgctgtggagacagat
gttcgtggtatcactggagttgacttgtttgggacaacagatgctgttgttaagcatgtt
ctggagggacacgaccgtggtgtcaactgggctgctttccaccccaccatgcccttgatt
gtttctggtgccgatgatcggcaggttaagatctggaggatgaatgagtccaaagcctgg
gaggtagacacatgccgtggtcactataacaacgtgtcgtgtgctgtgtttcacccgcgg
caggagttgatcctcagtaactcggaggacaagagcattcgtgtttgggacatgtcgaag
cggactggagtgcagacgttccgccgggatcatgaccgcttctgggtcctcactgctcat
actaatctcaacctctttgctgcaggtcatgacagcggcatgatcgttttcaaactagaa
cgtgaacgccctgcctacgctgtctacgggaacatcctttactacgtgaaggaccgtttc
ctgcgccaactggacttcaacagctccaaggacgtggccgtcatgcagctccgcagtggt
tccaagttcccagtgttcagcatgtcatataatccggctgaaaatgctgtcctgctttgc
acgagagcgagtaatttagaaaacagcacctatgacctttataccattccaaaggactcc
gactcacagaatcccgatgctcccgaaggcaagcgctcctctggattgacggctgtgtgg
gtagctcgtaatcgctttgcagtcttggatcgtatgcattctattctgattaaaaacctg
aaaaacgagatcactaagaaagttcaagttccaaactgcgatgagattttctacgccggc
acgggcaacctgcttctgagggactctgactcgatcaccctcttcgacgtgcagcagaag
agatcattggcttcagtgaaaatttccaaggtgaaatatgtcatctggtcgtcggacatg
tctcacgtggcgctgctgtctaaacatgctattctgatctgtaaccgaaagctcgattct
ctgtgtaacatccatgagaacatccgagtgaagagtggagcctgggatgagagcggagtt
ttcctttacaccaccagcaaccacatcaaatatgccctgaccaccggtgatcacgggatt
atccgtactctggacttgccaatttatgtgacgcgtgtgaaagggaacagcgtgtactgt
ttggatcgagagtgccgcccacgagtcctcaccattgaccccacagaattcaaattcaag
ttagcactagtcaacaggaaatatgatgaggtcttgcacatggtgcggaatgccaagctg
gtgggccagtctatcattgcttatctgcagaagaaaggataccccgaggtggctctgcac
tttgtgaaggatgagaaaacccgttttggccttgccctggagtgtggaaacattgagatt
gcattggaagctgccaaggccctggacgaccggaactgctgggagaagctgggagaggtg
gccctactgcagggtaaccaccagattgtggagatgtgttatcagcgcaccaagaacttt
gacaaactctccttcctttacctgatcaccggtaacctagagaaactgcgaaagatgatg
aagatagctgagatccgtaaagatatgagtggacattatcagaatgccttatacctggga
gatgtggctgagagagtccggatcctcaaaaactgtggacaaaaatctttggcgtatctt
actgctgcaacccatggactggatgaagatgcagaggcactaaaggcatcctttgacccg
gaaaaggaaacgattcctgagattgaccctaatgcccagctgctgcagccacctccccct
atcatgccactggacaccaactggcccctgttgactgtgaccaagggctttttcgagggg
gccattgcaagcaaaggtaaaggtggacatatggctgctgacatcgacattgacacagtg
ggaggagaaggctggggagaggatgctgaacttcagcttgatgaagatggctttgttgat
gctggagaaggatttggagaagatggcgttgggaaaggccaggaagaaggtggaggatgg
gacgtggaagaggatctggagttgcctccggaactggatatctcactgggtccagcaggt
ggcagtgaggaaggtttctttgttccacccactaaaggcgtcagcccaactcagacctgg
tgcaataactcccagctacctgcggatcacattcttgctggctccttcgagacggcaatg
aggctgctccacgatcaagttggtgtggtgaactttgggccctataaacaactctttatg
cagacctattcccgtgggcgcagtgtttaccaggctctccctgccctcccctcgatgttc
ggctatccgcagcgcaattggaaagaggctggtttgaaaaacggagtccctgctgttggt
ttgaaactgaatgacctgattcagcgcctccagctgtgctaccagctcaccacctcaggg
aagtttgaggatgcagtggagaagttccgcctaatcctgctgagtgtgccgctccttgtg
gtggacaacaagcaggagatctcagaggcccagcagctgataagtatttgccgtgagtac
atagttggcctgtccatggagatagagagaaagaagctcccgaaagatactctggaccaa
cagaagcgcatatgtgagatggcagcatatttcactcactcgaaccttcagccagttcat
atgatcctggtgctgagaacagctgtcaatctcttctttaaacttaagaacttcaaaaca
gcagcagcgttcgcacgcagactcctggagctcggtccaaaaccagaggtcggccagcag
actcggaagatcctagcagcttgcgaaaagaatctgacagatacccaacagctcaactat
gacatgcacaatccgtttgatatctgtgcggcttcatatcggcccatctaccgcggcaaa
ccggtggagaagtgtccactcagcggagcctgctacatccccgagttcaaagggcagatc
tgttatgtcactactgtgacagaagttggcaaagatgtcattggactccgagtcagccct
ctgcagttccgctga
DBGET
integrated database retrieval system
