Latimeria chalumnae (coelacanth): 102354367
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Entry
102354367 CDS
T02913
Symbol
XAB2
Name
(RefSeq) XPA binding protein 2
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102354367 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102354367 (XAB2)
03041 Spliceosome [BR:
lcm03041
]
102354367 (XAB2)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102354367 (XAB2)
Spliceosome [BR:
lcm03041
]
Complex B
Other components
Prp19-related factors
102354367 (XAB2)
Complex C
102354367 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_19
TPR_8
TPR_15
ARM_TT21
TPR_16
ARM_TT21_C
RPN7
TPR_1
DHR-2_Lobe_A
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
102354367
NCBI-ProteinID:
XP_006008659
Ensembl:
ENSLACG00000003363
UniProt:
H3A2A4
LinkDB
All DBs
Position
Un
AA seq
848 aa
AA seq
DB search
MPVQTDKLRLVFEEEDLLYEEEIIRNPYSVKCWMRYIEFKHNAPKNVVNLIYERALKELP
GSYKLWYNYLKQRRKQVKGKCITDPVFEEVNNCHERGLVFMHKMPRIWLDYCQFLMDQCK
ITRSRRTFDRALRALPITQHHRIWPLYLKFVRIYPLPETAVRVYRRYLKLSPENAEEYVE
YLRSIDRLDEAAVRLAAIVNDENFVSKEGKSNYQLWHEMCNLISQNPDKVKSLNVDAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETSSEIGQTEEDDIDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIIGTYTEAVQTVDPFKATGKPHTLWVAFAKFYEENGQLEDARTIFEKATKVN
FKQVDDLACIWCEYGEMELRHENYDQALRILRKGTANPGKKAEYFDATEPVQNRVYKSLK
VWSMLADMEESLGTFKSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATRAVEPTEQYEMYNIYIKRAAEIYGVTHTRTIYEKAIEVLSDEHSR
EMCLRFADMECKLGEIDRARAIYSYCSQICDPRTTASFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMASQMLKASSNATGTVSDLAPGQGGMDDMRLLEQKAQQLASEADQ
EKPKPKDKILFVRSDASQSELAELAKQANPDEINIDEDEDEDEENEPEEVPLEQKSVPSA
VFGGLRDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccggtccagacggataaactgcgactcgttttcgaagaagaagatcttttatatgaa
gaggagattatccgaaacccgtactctgtgaaatgttggatgagatacattgagtttaaa
cacaatgcccccaagaatgtggtgaacctgatttacgagagagctctgaaggagctgcct
ggcagctacaagctgtggtacaactacctgaagcagcggaggaaacaggtgaaagggaag
tgcattactgatcccgtgtttgaagaagttaacaactgtcatgagagaggtctcgtcttc
atgcacaagatgccccgtatctggctggattattgccagttccttatggatcaatgtaag
atcacaaggagtcggagaacctttgaccgtgccctgagagctcttcccatcactcagcac
caccgtatctggccactctacctgaaatttgtccgcatttaccctctgccagagacagcg
gtccgagtgtacaggcggtacttgaagctcagccctgaaaacgcagaggagtacgttgag
tacctgcgatctatcgaccggctggatgaggccgctgtgaggctggcagccatagtaaac
gacgagaattttgtttcaaaggagggaaagtcaaattaccaattgtggcatgaaatgtgc
aacctgatctcccagaatccagacaaggtcaagtctctgaacgtggatgcaattatccgt
ggcgggctgacccgcttcacggaccagctgggcaagttgtggtgttccctggctgactac
tacatcaggagcggccactttgaaaaggcacgtgacgtgtacgaggaagcgattcagacg
gtggtcacggtgcgggatttcactcaggtgtttgatagctacgcccagtttgaggagagc
atgatcgctgccaaaatggagacatcctcagaaatcggacaaaccgaggaagatgacatt
gatctggagctgcgattggctcgttttgagcagctaattaatcggcgccccctgctgttg
aacagcgtgctgctacgccagaatcctcacaacgtgcacgagtggcacaagagggtaaaa
ctgtacgagggcaagcccagagagataataggtacgtacacagaggctgtccaaacagtg
gatccttttaaagctacaggaaaacctcacacactctgggtggcatttgctaagttctat
gaagagaatgggcaactagaagatgcccgcaccatctttgagaaagccaccaaggtgaat
ttcaagcaggtggatgacctggcctgtatctggtgtgagtatggagagatggagctccgg
cacgagaactatgaccaggccttgaggatcctgcggaaagggaccgccaatccaggaaag
aaagcagagtactttgacgccacagagccagtgcagaaccgtgtgtacaaatcactgaag
gtctggtccatgctggctgatatggaggagagtctgggcaccttcaagtccaccaaggct
gtgtatgatcgaatcatagacctgcgaattgccaccccccagatcatcatcaactatgcc
atgttcctggaggagcacaactactttgaggaaagctttaaggcctacgagaggggaatt
gctctgtttaaatggcccaatgtgtacgatatctggaacacctacctgaccaagttcata
gatcgctatggtggcaagaagctggagagggccagggacctgtttgagcaggcacttgat
gggtgtccagccaagtttgccaaaacgatctacttgctttatgccaaactggaggaggag
tttggtttggcccggcatgccatggctgtatacgaacgggcaacacgagcggtggagccc
actgagcagtatgagatgtacaacatctacattaagagagcggctgagatctatggagtc
actcatacccgcaccatctatgagaaagccattgaggtcctgtcggatgagcactctcgg
gagatgtgtctacgctttgctgatatggagtgcaaactgggagaaatcgaccgggctaga
gccatctattcatactgttcccagatctgtgacccacggacgacagcctcattctggcag
acgtggaaggagtttgagattcggcatggcaatgaagacaccatccgggaaatgttgcgt
atcaagcgtagcgttcaggccacctacaacactcaggtcaacttcatggcttcacagatg
ctcaaagcctcctcgaatgccactggaacagtgtctgacttggctccaggtcagggtggc
atggacgacatgaggctgttagagcagaaagcccagcaactggcatctgaggcagaccaa
gagaaacccaaacccaaagataaaatcctcttcgtcaggagtgatgcctctcagagcgaa
ttggctgaacttgcaaagcaggcaaacccagatgaaatcaacattgatgaggatgaggac
gaggatgaagaaaatgaacctgaagaagtgccgctggagcagaagagtgtcccatcggct
gtgtttgggggactgagggacgactga
DBGET
integrated database retrieval system
