Latimeria chalumnae (coelacanth): 102355145
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Entry
102355145 CDS
T02913
Symbol
PCDH20
Name
(RefSeq) protocadherin 20
KO
K16498
protocadherin delta 1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102355145 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcm01009
]
102355145 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcm04515
]
102355145 (PCDH20)
Protein phosphatases and associated proteins [BR:
lcm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102355145 (PCDH20)
Cell adhesion molecules [BR:
lcm04515
]
Cadherins
Protocadherins
102355145 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DC_STAMP
Motif
Other DBs
NCBI-GeneID:
102355145
NCBI-ProteinID:
XP_006005223
LinkDB
All DBs
Position
Un
AA seq
888 aa
AA seq
DB search
MILQNSFSIRNEKLQRLFLFLLFAGPFNCFASYSMATELVYSITEGLPKGVLIGSIGADL
NLGYADPPLSFTLASNQISGQYVDLSSATGDLHTSAKEIDRERLCPGNLDIQDCILLLDI
IVLPQQYFRFVKIKVVVKDVNDNAPSFPVAVIHLSVPENAQVNTRLAIEHTALDPDVGVN
GVHTYWLENNFGVFTLDVEENVNGEKTPYLIVTGPLDRETRDEYVTSIIAEDGGNPPLLG
TAALKISITDVNDNCPVFNESQIKVTIYGNSTIGTLVTQVHAVDLDLGSNAQITYSYSER
VSQKTKALFTLGEITGTIKLSQRIDANTVQLHKLTVLGNGPGCIPAVITVLVSIIKVVFN
PPVIVPRYIATEAQGVIYLQESDPANSPIAFITIKDSDQKQKVDCYLEGDGPFRISPYQT
YINEYLLETTEPLDYELKQKYAITIFAKNSQGLLGRTFVKIQVVDENDNSPVFAHLLVEL
SLEENNTPNTFLTKLNAVDADSGERGEVSYFLQPDVASVFTLDAKTGVLTVSMSLDREKK
EKYKFSVKAVDSGVPPRESVATVILTVLDKNDNSPRFINKDFSFFVPENFPGFGEIGVIG
VTDADVGKNGWVALSILNGSDIFVIDTGNGVLRAKIPLDREQQGSYVLWIQAIDGGDPAL
SCAAKVTILLLDVNDNPPLVLFPQSNWSYLLVLPSTLPGSSITEVYAVDKDTGMNAVIAY
SIIGRRGPRPESFDIDATSGNITLQEALMETDYGLYRLLVKVSDHGYPEPLHSTIMVNLF
VNETVSNESYIESLLRREPKISMEEKQPEKLTVTQKQINSSSCLPTLIALSVINLAFLIS
VVLLATYICFKKGKRHGKKEESLEVQIPLNKETDFHRVEKKPVIITNI
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgattcttcaaaacagctttagcattcgcaatgaaaaactacagcgcctgtttctgttc
ctcctgttcgccggacccttcaactgctttgcaagttacagtatggcaacggaactggtt
tattccataactgagggattaccaaaaggagtattaatcgggagcatcggagcagatctg
aacttgggttatgccgatccccctctttcattcaccctggcgtccaaccagatcagcggc
cagtatgtggacctcagcagcgccactggagacctgcacacctctgccaaggagattgac
cgtgaaaggctttgtccaggaaacctggacatccaggactgcatcttgcttttggacatt
atcgttctgccgcagcagtatttcagatttgtgaagataaaagtcgttgtgaaggatgtt
aatgacaacgcgccctctttccctgtggctgtgatccatctctcggtgccagaaaatgcc
caagttaacacgcgccttgcgattgaacacaccgccctggatcctgacgttggtgtcaat
ggagttcacacttactggctggagaataactttggtgtcttcaccctggatgtggaggaa
aatgtcaacggggaaaagactccgtacttgattgtaaccggccccctggacagagagacc
cgggatgagtatgtcaccagtatcattgctgaagacggaggcaatccaccgctcctgggg
actgcagccttaaaaatatcaataacggatgtaaatgacaactgccctgtgttcaatgaa
tcccagatcaaagtgactatttatggaaattcaacaattgggacgcttgtgactcaagtc
catgctgttgatttggatttagggtccaatgctcaaataacatattcttatagtgaaaga
gtctcccagaaaactaaagctttatttacacttggcgaaattactgggactataaaactg
tctcaacggatagatgctaatactgtccagttgcataagttaacagtacttggcaatggg
ccaggttgcatcccagctgtcatcacagtactggtgtccattataaaagttgtctttaat
cctcctgtgattgtccctcgttacatagctactgaagcacaaggagttatttatcttcag
gagtcagaccctgcaaactctccaatagcattcattacaataaaagactccgatcaaaaa
cagaaagtggactgttatctggaaggagatggtcctttcagaatatcaccctaccaaact
tatataaatgaatatttgctagagactacagaacccttggactatgagctcaaacagaag
tatgcaattacaatatttgccaagaattcacaaggtcttcttggcaggacctttgtaaaa
atacaagtggtggatgaaaatgataattctccagtctttgctcaccttctggttgaattg
tctcttgaagaaaacaatacccccaacacttttttgactaaactgaatgcagtggatgct
gacagtggggaaagaggggaagtttcatattttttacagcctgatgttgcttcagttttc
acattagatgctaaaacaggggtgcttacagtgtccatgtcattggatcgagagaaaaag
gaaaaatacaaattttctgttaaagctgtggattctggagtgccacccagagaatctgtt
gcaactgtgatactcacagtattggacaaaaatgacaatagtccaaggtttatcaacaaa
gacttcagcttctttgtaccagaaaattttccaggctttggtgaaattggggtgattggt
gttacagatgctgatgtaggaaagaatggttgggtggcattgtccatacttaatggaagt
gacatttttgttatagacactggtaatggagttttaagagctaagatacctttggatcgg
gagcagcagggctcttatgttctttggatccaggctattgatggaggagatccagccctc
tcttgtgctgcaaaagtcaccatacttcttttggatgtcaatgacaatccacctttagtt
ttgttccctcagtctaattggtcataccttttggttcttccatctacccttcctggctcc
tccattacagaagtttatgctgttgataaggacactggaatgaatgctgttatagcttat
agcattattggcaggagaggacctcgccctgaatcttttgatattgatgcaacatcaggt
aatatcacattgcaggaggcactgatggagactgactatggactatacagactcctagtg
aaagtgagtgatcatgggtatccagagcccctccattctacaataatggtcaacttgttt
gtcaatgaaactgtgagcaatgagagctatatagaaagcttgttaaggagggaaccaaaa
attagcatggaggaaaaacagccagaaaaacttacagtgacacaaaaacaaattaattcc
tcttcttgtctgcctacattgatagcactttcagttataaacttagcatttctcatctct
gtagttttattggcaacatatatttgtttcaagaaaggaaaacgacatggaaagaaagaa
gaaagcttggaagtacaaatccctttaaataaagagactgattttcacagagtggagaag
aaaccagtgataattacaaatatttaa
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