Latimeria chalumnae (coelacanth): 102356429
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Entry
102356429 CDS
T02913
Name
(RefSeq) embryonic polyadenylate-binding protein-like
KO
K13126
polyadenylate-binding protein
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03015
mRNA surveillance pathway
lcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102356429
09123 Folding, sorting and degradation
03018 RNA degradation
102356429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102356429
03041 Spliceosome [BR:
lcm03041
]
102356429
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102356429
mRNA cycle factors
Stress granule specific factors
102356429
Spliceosome [BR:
lcm03041
]
Complex C
Other components
Complex C specific factors
102356429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RBD_DEAH11
RRM_10
RRM_5
RRM_3
ATP-grasp_2
Motif
Other DBs
NCBI-GeneID:
102356429
NCBI-ProteinID:
XP_014350556
Ensembl:
ENSLACG00000005762
LinkDB
All DBs
Position
Un
AA seq
616 aa
AA seq
DB search
MNASGPGYPLASLYIGDLHSDVTEAMLYEKFSPAGPIMSIRVCRDMITRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAARAIETMNGMLLNDRKVFVGHFKSRKERE
AEYGSKAMKFTNVYVKNFGELMDDESLREIFSKFGKTLSVKVMTDERGRSRGFGFVNFQN
HEEAQKAVTEMSGKELNGRVLYVGRAQKKLERQGELKRKFEQIKQERMNKYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRAMPGHLIGSYQQPSGYFMPAVPQPPSRAAF
YSPSPIAPIRPTSRWTAHAARPPTSYQPVTPIIRTTVPRRPLTTISTMRQASTQAPRVLS
NTQRVANIGTQTAGPRSAISTPIMRNMPPHYKYSAVVRNAQHVGNASVQIPVQQLQIYFV
FYLSNETGERLYPLIHTMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQ
AHQAKESVQKTETPLT
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaagtggtcctggatatcctttagcctccctttatattggagacctgcactca
gatgtcactgaggcaatgttgtatgagaagttttctcctgctggaccaatcatgtccatt
agagtttgccgtgatatgataacccgcagatccctggggtatgcctatataaactttcag
cagccggcagatgctgaacgtgcactggacacaatgaattttgaagtgataaaaggcaga
ccaattcgaattatgtggtcccaacgtgatccaggtctgcgtaagtctggtgttggcaat
atcttcataaaaaatttggatgactcaattgataacaaagctctctatgataccttttcg
gcttttggtaatatattgtcgtgtaaggtagtttgtgatgagaatggatcaaaaggttat
ggttttgttcactttgagacacatgaagcagcagctcgtgccattgagacaatgaatgga
atgcttcttaatgatcgcaaagtgtttgttggccattttaaatctcgtaaagagagagaa
gcagagtatgggtcaaaagcaatgaagtttaccaatgtctacgtaaagaactttggggaa
ttaatggatgatgagagtttgagagaaatattctcaaaatttggcaaaactctaagtgta
aaagtaatgactgatgaaagggggcgatccagggggtttggatttgtcaactttcagaac
catgaggaagcccaaaaggctgtaacagaaatgagtggtaaagaattgaatggacgggtt
ctttatgttggtcgagcacagaaaaagttggaacgtcaaggagagctaaaacgaaaattt
gaacaaataaagcaagagagaatgaataaatatcagggagtgaacctttatgttaaaaac
cttgatgatggcatagatgatgaacgattaagaaaagaattttctccctatggtacaatc
acaagtgcaaaggtgatgactgatggtggacacagcagagggtttggatttgtgtgcttc
tcctcaccagaagaagctacaaaggctgttacagaaatgaatggcagaattgtgagcaca
aaaccattgtatgttgccttggctcagcgtaaggaggagaggaaggctattctaaccaat
cagtacatgcagagattggcaactatgagagcaatgccaggtcatctaattgggtcatac
cagcaaccatctggatacttcatgcctgctgtaccacagccaccgagcagggcagccttc
tatagtccaagtcccattgccccgatccgtcctacatctcgttggacagcacatgcagcc
aggcctccgacatcataccaacctgtaactcccattataaggacaacagttccacggcgg
cctcttaccacaatcagcactatgagacaggcatcgacacaagcacctagagttctatcc
aatacccagagagtagctaatataggtactcaaacagctggacctcgctcagccatttct
accccaataatgagaaatatgccaccacattacaaatattctgcagtagtccgcaatgca
caacatgttgggaatgcatctgtgcagatcccagtacagcagctacagatttattttgtg
ttttatctttctaatgaaacaggtgaacgactttacccattgatccatacaatgcacccc
tcgctggctggtaaaatcacaggaatgctgttggagattgataactctgaacttctgcat
atgttggagtctcctgagtctctgcgatcaaaggtggaggaagcagttgcagtacttcaa
gcacaccaagctaaggagtctgttcaaaaaacagaaacacccctcacctaa
DBGET
integrated database retrieval system
