KEGG   Latimeria chalumnae (coelacanth): 102357350
Entry
102357350         CDS       T02913                                 
Symbol
EXOSC10
Name
(RefSeq) exosome component 10
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102357350 (EXOSC10)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102357350 (EXOSC10)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     102357350 (EXOSC10)
SSDB
Motif
Pfam: DNA_pol_A_exo1 PMC2NT HRDC DUF4230
Other DBs
NCBI-GeneID: 102357350
NCBI-ProteinID: XP_005994065
Ensembl: ENSLACG00000016691
UniProt: H3BAQ0
LinkDB
Position
Un
AA seq 891 aa
MAVPSSGVGSGTKSKTGTAENEEKEGEVIPGFKDADSFVKYALGTVVTATKASGGLPQAG
DEYDFYCSFPGFRAFCESQGDRLLKCMSQLMQYHGCRSHIRDCNKVTELEDKFDLLVDSN
DVILERVGIFLDEASGVNKNQQPVLPVGLQPPKTIVSSWNRKGSAANKSKSETFRLLHAK
NIPRPQIKFREKIDNSNTPFVPKIFIKPNALKPLPQVLRNRRAWEERPEDLDVPPALADF
IHQQRTQQNEQDMLAHPYQYELDHFVPAETLLKKPEPQMYKPLSETSCHFINNLDELVEL
NEKLCRYKEFAVDLEHHSYRSFLGLTCLMQISTRDEDFIIDTLELRSDLYILNEAFTDPA
IVKIFHGADSDVEWLQRDLGLYVVNMFDTHQAARILNLGRNSLDHLLKLYCSVESDKRYQ
LADWRIRPLPEEMLQYAREDTHYLLFIYDKMRAELWDKGNGQLHFLQMVWQKSKEICLKR
YIKPIFTEDSYLELCRKQKKQLNSQQLMAVQLLYAWRDKMSRHEDESTGYVLPNHMLMKI
AEELPKEPQGIVACCNPIPPSVRQQVNELHLLVQQAREIPLLKTEILAREKKKGLVPKPE
RTASLFFGPHDDTHLSTGDIPVFPTSAPILQKSSLFSDEEEMEEAETLPSSSSLLATATI
SVFNYPEDEEKTLTTAQQKASSIMESFENPFRMYLPPEDNKIHISKNAKFDPSSKVYEIS
NRWKLVSQEQLQKEAKAKMEAKAKASAQKSAVREQIQKDYKAAAEEVISVRQQAAMAQSE
QVTKKRERVAHEPGSLTPKQEKKRPKPSQQPAEKQTPKQFTPFDYSKSDFKVFAGGSKSK
ESSQFDPNKQAQPVHQSKKLSSKHRSSAGNKSMSYLGGRSERGFKHKWPKR
NT seq 2676 nt   +upstreamnt  +downstreamnt
atggcggtgcccagcagtggtgtgggctcgggcaccaagagcaagacgggaactgcagaa
aatgaagagaaggagggagaagtcattcccgggtttaaagatgccgactcgtttgtgaag
tatgcacttggaacagtggtcactgccacaaaggcttcaggtgggcttccacaggctggg
gatgagtatgatttctattgcagtttccctggctttcgggcgttctgtgaaagtcaaggt
gacagactgctgaaatgcatgagtcaactaatgcaataccatgggtgtcgaagccacatc
agagattgtaacaaggttacagaacttgaggacaaatttgatttgctggtagattctaat
gatgtaatacttgaaagagtgggtatttttttggatgaagcttctggagtaaacaagaat
caacagcctgtattgccggttggcttgcagcctcccaaaactattgtctccagctggaac
cgcaagggcagtgcagccaacaaaagtaagtctgaaacgttccgtttgctccacgccaag
aatattcctcggcctcagatcaaatttagagaaaagattgacaactccaatacgccattt
gtgccaaaaatatttattaaaccaaatgcactaaagccactaccacaagtactaagaaac
agaagagcctgggaggagcgtcctgaggatcttgatgtacctccagccttggcagacttc
attcatcagcagagaacccagcaaaatgagcaggacatgcttgctcatccatatcagtat
gagttagatcactttgtaccagcagaaactttattgaagaaaccagaaccccagatgtat
aaacctttgtcagagacgagctgtcatttcataaataacttggatgaactagttgaactg
aatgaaaaactctgtaggtataaagagtttgctgtagatttagagcaccattcatataga
agtttcttgggtttgacctgcctcatgcagatatcaacacgagatgaagattttattatt
gacacattggagctacgcagtgatctttacattctcaatgaagccttcactgatcctgcc
attgtcaagatcttccatggtgcagattctgatgtggagtggttacagagggatttgggg
ctctatgtcgtgaatatgtttgacacgcaccaagctgcccgcattctcaatctgggcaga
aactcattagaccaccttctgaaactatactgttctgtggagtcggacaaacgataccaa
ctagctgactggcgaattaggcctttgccagaagaaatgctccagtatgctcgagaggac
actcattaccttctgtttatctatgataagatgagagcggaactgtgggataaaggaaat
gggcaattacattttctccagatggtgtggcaaaaaagcaaggaaatttgccttaagaga
tacatcaaaccaattttcaccgaggattcctatcttgaactgtgcaggaaacagaagaaa
cagctcaactcacagcagctgatggctgttcaactgctatatgcctggagagataagatg
tctcgacatgaggatgaaagcacaggatatgtccttcctaaccacatgttgatgaagata
gctgaggagcttcccaaagagccccagggtatcgtcgcctgttgtaatccaatcccacct
tcagtgagacaacaagtaaatgaactacaccttttagttcagcaggcacgagaaattcca
cttctgaagacagaaatcctagcaagggaaaagaagaaagggcttgtgcccaaaccagag
aggacagcgagcttattctttggaccgcatgatgacacccaccttagtacaggtgatatc
cctgtttttccaacctctgctccaattctccagaaaagcagcctattctcagatgaagag
gagatggaggaagccgagacattacctagtagtagctctctgctagctacagctaccatc
tcagtcttcaattatcctgaggatgaagagaaaaccttgacaacagctcagcagaaggcc
agtagcatcatggagtcttttgagaatccattccgaatgtatttgcctcccgaagacaac
aagattcacatatctaaaaatgcaaagtttgatccatcatctaaagtatatgagatcagt
aataggtggaaactggtcagtcaagaacagctccagaaagaggctaaagcaaagatggaa
gccaaagcaaaagcatctgcacagaaatcagctgttcgggagcagatacagaaggactac
aaagcagcggctgaagaagtgatctctgtccgacagcaggctgcaatggcacaatcagaa
caagttacaaagaaaagggagagagtggcacatgagccaggatcactgactccaaagcaa
gagaagaagcggcctaaaccttcccagcaacctgcggaaaaacaaacaccaaaacaattc
acacctttcgactacagcaagtcagacttcaaggtgtttgctggtggtagcaaatctaag
gaatcgtcccagtttgaccctaataaacaagcccagcctgtccatcagtccaaaaaattg
tcaagcaagcatcgttcatctgcaggaaacaaaagcatgtcatacttgggtggcagatct
gagagaggtttcaaacataagtggccaaaaagatag

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