KEGG   Latimeria chalumnae (coelacanth): 102357351
Entry
102357351         CDS       T02913                                 
Symbol
ATG16L1
Name
(RefSeq) autophagy related 16 like 1
  KO
K17890  autophagy-related protein 16-1
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm04136  Autophagy - other
lcm04140  Autophagy - animal
lcm04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    102357351 (ATG16L1)
   04136 Autophagy - other
    102357351 (ATG16L1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    102357351 (ATG16L1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lcm04131]
    102357351 (ATG16L1)
   03029 Mitochondrial biogenesis [BR:lcm03029]
    102357351 (ATG16L1)
Membrane trafficking [BR:lcm04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    102357351 (ATG16L1)
 Others
  Specific organelles associated proteins
   Auto phagosome
    102357351 (ATG16L1)
Mitochondrial biogenesis [BR:lcm03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    102357351 (ATG16L1)
SSDB
Motif
Pfam: ATG16 WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_TEP1_C Beta-prop_DCAF12 Beta-prop_EIPR1 DMPK_coil APEH_N Hira HEF_HK Sec66 Spc24
Other DBs
NCBI-GeneID: 102357351
NCBI-ProteinID: XP_014343630
LinkDB
Position
Un
AA seq 358 aa
MSGRLCLWKRRISEQLRQRDRIQRLAFEELIQQYNRLLEKSDLQSVLAEKLQVDKYDVQN
RHDVSPVHDGVRNDALLQEMAQMRIKHQEELTELHKKRGEVGALLMAEFQRRITMLEADG
LELRNNLQDLERANQTLKDEYDALQITFNALEAKLRKTEEDNRELVSRWMAEKAQEANRL
NAENEKDCRFDSVGIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRAESVVRDLTLQ
GRITALDLNPERTELLTCSRDDLLKIIDLRKNAVKQTFRWIGLLELIIFFSYCSPDGCYV
MAGSADGVLYVWNVHTGKVEKALGKHHSSSINAVAWSPAGSHVVSVDRGSRAVLWSAL
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgtcgggccggctgtgcctgtggaagcggcggatttcggagcagctgcggcagcgagac
cgaatccagaggctcgccttcgaggagctgattcagcaatataaccggttgctggagaaa
tctgacctgcagtctgtacttgctgagaaacttcaagtagataagtacgatgttcaaaac
agacatgatgtcagtcctgtgcatgatggagttcgtaacgatgcgctgctacaggaaatg
gctcagatgcggattaaacaccaggaggagctgactgagctgcacaagaaacgaggagag
gtcggtgcccttttgatggccgagttccagcggaggattacgatgttggaagcagatggt
ctggagcttcgtaataacctccaggacctggagcgggccaaccagacgctgaaggacgag
tacgacgccctgcagatcaccttcaacgcgctggaggcgaagctgcgcaaaacggaggag
gacaaccgggagctggtctcgcgctggatggccgagaaggcgcaagaggccaaccgacta
aacgcagagaatgagaaggactgcagatttgactctgtaggtataaagactgtgtttgct
ggttcgagctgtaatgacattgtctgcacagagcagtgtgtgatgagtggacactttgac
aagaagattagattttgggacatcagggcagagagtgtggttcgagacttgacgttacaa
gggcgaatcactgcgctggatctgaaccctgagaggacggagctgctcacctgctctcga
gatgacctgctaaagattatcgacctgcgcaaaaacgccgtcaagcagacgttcaggtgg
attggcttgcttgagttaattatttttttttcctattgtagccctgatggttgctatgta
atggcaggctctgctgatggagttctctacgtctggaacgtgcacacagggaaggtggaa
aaggccttagggaaacaccacagttcctcgatcaacgctgttgcctggtctccagctggc
tcccatgttgtcagtgtggacagaggaagtcgagctgtgctgtggtcagctctctga

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