KEGG   Latimeria chalumnae (coelacanth): 102357508
Entry
102357508         CDS       T02913                                 
Symbol
LSM4
Name
(RefSeq) LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03018  RNA degradation
lcm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102357508 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102357508 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102357508 (LSM4)
   03041 Spliceosome [BR:lcm03041]
    102357508 (LSM4)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102357508 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102357508 (LSM4)
Spliceosome [BR:lcm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102357508 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 102357508
NCBI-ProteinID: XP_005993217
Ensembl: ENSLACG00000015861
UniProt: H3B7Y2
LinkDB
Position
Un
AA seq 140 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQQKQQQKGRGAGGAARGVFGGRGRGI
PGSGRGQQEKKPGKQLGGKQ
NT seq 423 nt   +upstreamnt  +downstreamnt
atgcttccattatcattactgaagacggctcagaatcatcctatgttagtggagttgaag
aatggggaaacgtacaatggtcacttggtcagctgtgataactggatgaacatcaacctg
agagaagttatctgtacgtccagggatggtgacaaattttggaggatgccagagtgctac
atacgcgggagcaccattaaatacctgcgaattccagatgaaattattgacatggtaaag
gaggaagtagtgtccaagggaagaggccggggaggaatgcagcaacagaaacagcagcaa
aaaggtcgtggagctgggggtgcggcacgaggtgtatttggtggccgaggacggggaata
cctggtagtggcagagggcagcaggaaaagaaacccggaaaacagttgggcggaaagcag
tga

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