Latimeria chalumnae (coelacanth): 102357559
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Entry
102357559 CDS
T02913
Symbol
CIITA
Name
(RefSeq) class II major histocompatibility complex transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lcm01001
]
102357559 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lcm04054
]
102357559 (CIITA)
Enzymes [BR:
lcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102357559 (CIITA)
Protein kinases [BR:
lcm01001
]
Serine/threonine kinases: Other
TAF1 family
102357559 (CIITA)
Pattern recognition receptors [BR:
lcm04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102357559 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
NB-ARC
LRR_9
LRR_8
CARD
NPHP3_N
nSTAND_NTPase5
nSTAND6
ABC_tran
RsgA_GTPase
LRR_Zer-1
AAA_22
nSTAND3
TsaE
DUF87
AAA
Motif
Other DBs
NCBI-GeneID:
102357559
NCBI-ProteinID:
XP_014351228
LinkDB
All DBs
Position
Un
AA seq
1278 aa
AA seq
DB search
MNRFEEVLPSVRRILSIATPSEIQALLDDLLEKCLLSKEYYLVLLNESDTEDLARKICLN
LMEKWDMCSSTLISVLCFHFYKAKQQNAKVGGYPSMERPTNKVKSQDYTMADHSHLSLLQ
NDIDPLALMETMRQEPVEQIVGQIDAEVPYTNQDLASLFDLICGNFNESIEHVPEPDHPV
EDAAQIAGIIKFLKEEQDVPSTIALEDISVEERPSSEDKNSQSTSASVRKKRKYPKSSLK
MRGQPPADAVKPKCRKKGVKREKETSSINNKAMNVDTPGKRRHQKRGAKKHSKDEKKNSI
SKTNKPHAVNEASATPMTSGNFVAVTTPARFISAASNQAYQLLQIPLTSVFPVPTITSSP
AAGVGRIQVVSAFTFPQQIINLPVAHPVHKLFVVSSPTKAITPGSPVSFPAVDSVQGCTV
QSASISHDRPVPASSLTPPAATPNTPYSRVQSETTDMEATSSKKSPAVSCIQTEQEPEKP
KSVEIFTKLLKDYLKDVCGHVSMECDTALEALYIDVSLIQGHIKTKSGKNANKCLEKELV
IYDAAEREKAAIERSQIFETMSGKPKETKVIALLGQAGMGKSILVKKICQDWAKGEISQF
EFVFWFECKRLNFSGKRYTVRDLLFELFAKPQEKCDEVFRYILHNPEKVLIIFDGFDDFL
DYDGLAHCSACTSMKEFHTVKELFAGLLQKKVLHGCTMLITGRPKGAFNQYLFKVDKIVE
VIGFSPQQIEEYMTKYFNGTPQPSEKVKLIKDCPFIYSYCYCPLLCRLVCFLCEALHKTG
DKEFPITLTTLYLNVFQQKLMGVVSSTISETLKANIQYITKLNCLAWTGVQNYQNVLIDN
LGSKELKEFALKHGFLTPFPINPDGKNEGFGIAFTNFIVQNFFGALHLTLAEDISDKGLV
KLISLEQKKKKTQEDRLNTVRRFLVGLLFLEEDRYLNCLSAKNIEKIVIKKQTAVSRYLK
KLLQCEPNANKLLELCHCVYEAQDSGLIRYVASKLSSELSFKDTRLNPPDVFVLQYVLRR
ANKKFSVDLRNTGIDLHGMKEIVKLKNVTSFRASIRDTIQLWETLQKLNDCESLRMSVEK
YIISPFKAKSLKDIDAIIALVQIHRENTLFPCTDDAPCNESVGIPAVTNLKKLEFALGPV
CGQNGFWKLVEVLPEFHSLQHLDLDTLSENKIGDKGVEKLAEVFPNLLKLETLNLSQNNI
TDTSVEKLANAFPILTSLKTISLYNNCISDSGAENLAKALPLMKTLIELDVKYNKITDVG
AQKLTESLKSCPQIKSIA
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgttttgaagaagtcctacccagtgttagaagaatcctttccattgccaccccg
tctgaaatccaggctttgctggatgaccttttggaaaaatgtcttttgtcaaaggaatac
taccttgtattgcttaatgagagtgacactgaagatttggcaaggaagatatgtttgaat
ctgatggaaaaatgggatatgtgctccagcaccttgatctctgttctttgttttcacttt
tataaagccaagcagcaaaatgctaaagtaggtggttacccctcaatggaaaggccaaca
aataaagttaagagccaagattatactatggctgatcacagccacctcagtttgttacaa
aatgacatcgatccacttgcactgatggaaaccatgcgtcaagaaccagtagaacagatt
gtcggccaaatagatgctgaagttccttacactaatcaggacttagccagcctttttgat
cttatctgtggaaactttaatgaaagtattgaacatgttccagagccagatcatccagtg
gaagatgcagcccaaatagctgggataataaagtttttgaaagaggaacaggatgtacca
agcacaatagctttggaggacatttctgtagaggaaaggccttcttcagaggataaaaac
agccagagcacctctgcttcagtgaggaagaagagaaaatacccaaaatcatctttgaaa
atgagaggtcaaccccctgcggatgctgtgaagccaaagtgcagaaaaaaaggagtgaaa
cgagaaaaggagaccagctcaattaataataaagctatgaatgtggacactccaggaaaa
cgtagacatcagaaaagaggtgcaaaaaaacattccaaagatgaaaagaaaaatagcata
tccaaaactaacaagccacatgcagttaatgaggcttcagctactccaatgacaagcggc
aattttgttgccgtaaccactccagcaagatttatttcagcagccagcaatcaagcctat
cagctcttacaaatacccctcaccagcgtgtttccagtgccgactatcacaagtagccca
gcagctggtgtgggaagaatccaggttgtttcagccttcacatttcctcagcaaatcatt
aacctacctgtagctcatcctgttcataagctcttcgtagtatcttcaccaacaaaagct
ataacccctggatcacctgttagttttcctgctgttgattcagtacagggctgcactgtt
cagagcgcgtcaatatcccatgatagaccagtcccagccagttcattgactccaccagct
gccactccaaataccccatattctcgtgtccagtctgaaacaacagatatggaagcaaca
tctagcaaaaagtctccagcagtttcctgtattcagactgaacaggaacctgaaaagcca
aagtcagtagaaatctttacaaaactattaaaagactacttgaaagatgtctgtggacac
gtgagcatggaatgtgacacagcacttgaggctctttatattgatgtcagtctgattcag
ggacatattaagacaaaatccggaaagaatgccaacaagtgccttgagaaagagcttgta
atctatgatgcagcagaacgtgaaaaagcagccattgaaagaagccagatttttgaaacc
atgagtggaaaaccaaaagaaacaaaagtaattgctttgctgggacaggcaggaatgggc
aaaagcatccttgttaaaaaaatctgccaagactgggcaaaaggagagatttcacaattt
gaatttgtcttttggtttgagtgcaaaaggttgaatttttctggaaaaagatataccgta
agggacttgctttttgaactatttgcgaaacctcaagaaaaatgtgatgaagtctttaga
tatattcttcataatcctgagaaagtgctcattattttcgatgggtttgatgactttctg
gattatgatggccttgcacattgttcggcttgtacgtctatgaaggaatttcacactgta
aaggagctgtttgcaggacttttgcagaagaaggtactgcatggatgcacaatgctaatt
acaggaagacccaagggagccttcaatcagtacctatttaaagtagacaagatagtcgaa
gtgattgggttctctccacaacagatagaggaatatatgactaaatatttcaatgggaca
cctcaacccagtgagaaagtgaagctaattaaagactgcccattcatctacagttattgc
tattgtcctcttctatgtaggcttgtttgtttcctttgtgaggccttgcacaaaacagga
gacaaagaatttcctataactctcacaaccttatacttgaatgtttttcaacaaaagctt
atgggtgtagtcagttcaaccatatctgagactctgaaagcaaacattcagtacataacc
aagttaaactgtctggcctggactggggttcagaattatcagaatgtgttaattgataac
ttgggttctaaagaactaaaggagtttgctttaaaacatggttttctcactccattccca
ataaatccagatggcaaaaatgaaggctttggtattgcatttaccaactttattgtccag
aacttttttggagctttgcatctaaccttagctgaagatattagcgataagggtcttgta
aaactaatttctctggaacagaagaagaaaaaaactcaggaagaccgcttgaacacagtc
cgcagattcttagtaggactgctgttcctcgaagaagaccgctacctaaactgcctttct
gctaagaatatagaaaagattgtcatcaagaagcaaacagctgtctcaaggtacctgaaa
aagttattacaatgtgagcctaatgcaaacaaactccttgaactgtgtcattgtgtttac
gaagcacaggatagtggtctgatacggtatgtggcttcaaaacttagtagtgaactttcc
tttaaagatacacggcttaacccaccagatgtttttgtgctgcagtatgttttaagaaga
gccaataagaaattctcagtggatcttaggaatactggcatcgaccttcatggaatgaaa
gagattgttaaattaaagaatgtgacatctttcagggcatctatacgtgatacaattcaa
ctttgggaaactttgcaaaagctgaatgactgcgaatctttgagaatgtctgttgagaaa
tacattatcagtccatttaaggccaagagcttgaaggacattgatgcaatcattgctctg
gtgcagatccacagagagaacacattgtttccatgtactgatgatgcaccttgtaatgag
tctgttggaattcctgctgtcacaaacttgaaaaagctagaatttgcacttggacccgtc
tgtgggcagaatggattttggaagcttgtggaagttctaccagaatttcattcacttcag
cacctcgacctggatactctcagtgaaaataaaatcggagataaaggagtggaaaaactg
gcagaagtatttcccaacctactaaagctggaaacattaaatttatcccagaacaatatc
actgacacaagtgtagaaaaactggcaaatgctttccctattctaacatctttaaagacc
atcagcctatataataattgtattagtgattctggagcagaaaacctagcaaaagcactg
cctttaatgaagaccttaattgaactagatgttaaatacaacaagataactgacgttggc
gctcagaagctgacagagagtctaaaaagctgtccccagattaaaagtattgcgtaa
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integrated database retrieval system
