Latimeria chalumnae (coelacanth): 102358111
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Entry
102358111 CDS
T02913
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03030
DNA replication
lcm03410
Base excision repair
lcm03420
Nucleotide excision repair
lcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102358111 (RFC1)
03410 Base excision repair
102358111 (RFC1)
03420 Nucleotide excision repair
102358111 (RFC1)
03430 Mismatch repair
102358111 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcm03032
]
102358111 (RFC1)
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102358111 (RFC1)
DNA replication proteins [BR:
lcm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
102358111 (RFC1)
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
102358111 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_14
Rad17
BRCT_2
AAA_30
RuvB_N
RNA_helicase
AAA_7
AAA_5
nSTAND3
AAA_16
AAA_33
AAA_18
AAA_17
Zeta_toxin
TIP49
AAA_19
NTPase_1
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
102358111
NCBI-ProteinID:
XP_014353333
Ensembl:
ENSLACG00000003000
UniProt:
H3A132
LinkDB
All DBs
Position
Un
AA seq
1150 aa
AA seq
DB search
MDIRRFFGVVTPGKKSGKEAIEKNGKAKSGEGTSGEKKKKKKKETKVKSISSDEDSSRHK
QANKRKRVIYDSDSEPEESPTIRKQQKTTKELPPSSKSVKTQKKESITCVPDTDEEDEFV
SMKPSKLKENGVSSSTQLGSRKLTSTKSQVEQKPASPVKRTPTSVLDFFGTGSIQRSEKK
LVASKRKVPSGSADDATLEDEALARQLQMEEDAMFERQLHEDQEFARTLAMLDETPKSKK
PREKVEEQQPSTSTVVKTSPSKTGKPEVAESDKKIVVADNAKSPGEKREKWKLDSPVKMS
QSGLARSQADKVAPSKSSPIKTSSKLVAMKWKEEGEKQESDKRAPPRKEKVVSPVKEEKV
SPKKSESISPQDSEKKRVNYQAYRNFLNREGPKALGSKEVPQGAENCLEGLTFVITGVLE
SFERDDVKSLIERYGGKVTGNVSKKTSYLIKGRDSGKSKVEKAESLGTKVIYEDGLLDLI
RTMPGKKSKYEVAAEVELKRSKLKSERTPEKGPSKKAEQQSKKASPPEKEVEQKKSSSPP
QQGESSRSGTAEAKRGLSFLREPDDKPSVKAERSADLSKGKTDSLLWVDKYKPTSLKAII
GQQGDQSCVNKLLRWLRDWYKNHSGDQKPVAKFSKFGSKDNGSTCKAALLSGPPGVGKTT
TAALVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIKGFYSGTSQSVSNEHVLIMD
EIDGMAGNEDRGGIQEMISLIKQTKIPIICMCNDRNHQKIRSLVHYCFDLRFQRPRVEQI
KGAMMSIAFKEGLKIPPPALNEIILAANQDIRQVLHNLSMWCAKDKALTYDQAKADASKA
KKDIKMGPFDVARKVFAAGEETAHMTLVDKLDLFFHDYSLAPLFVQENYLHVKPAAAGGN
LKRHLILLSKTADSICDGDLVDRQIRSKQTWSLLPTEAIYASVIPGELMRGYMSQFPNFP
SWLGKHSSTGKHDRVTQELATHMSLRTNASKRSINLDYLPYLRDSLVKPMVHRGVDGVRE
TVEFMDAYCLMKEDVDNIMEISTWRNEPDPFSKLDPKVKAAFTRTYNKEAHLTPYSLHAV
KKGKRGAGSALDSDLNEELRGGDVQQQENEEDDNIETDAMIKQKKVKSSKCAKAEKEETS
KGKGKGKKTK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatatccgaagattttttggggtggtgacgcctgggaaaaaatctggaaaagaggcc
atagaaaagaacggcaaggccaaaagtggagaaggaacttcaggtgaaaagaagaagaag
aagaaaaaggagaccaaggtgaagagcatatcaagcgatgaagactcctcaagacataag
caagcaaacaagagaaagagagtcatctatgattcggattctgaacctgaggagtcgcca
accattaggaagcaacagaaaacaacaaaggagttgccaccatcatcgaaatcagtgaaa
actcagaagaaagaatctatcacctgtgtcccggatacagatgaagaggatgaatttgtg
agcatgaagccctcaaaactgaaggaaaatggggtttcctccagcactcagctaggaagc
agaaaattaaccagcacaaaatcacaggttgagcaaaagcctgcctcgccggtgaagcga
acaccaacgtccgtgctagacttctttggaactggcagcatacaaaggtctgaaaagaaa
ctggtggccagcaagaggaaagtaccttcagggagtgcagatgatgccacactggaagat
gaggcccttgctagacagctacaaatggaggaagatgcaatgtttgaaagacaactgcat
gaagatcaggaatttgcacgaaccttggccatgttggatgaaaccccaaagagcaaaaaa
ccacgagagaaggtggaagagcagcagccatccacgtccacagtggttaaaaccagtcca
agcaaaacgggcaaacccgaggtggctgagtcagataaaaaaatagttgtggcagacaat
gctaaaagccctggtgaaaaacgagaaaaatggaaactggacagtccggtcaaaatgtcc
cagtctggacttgctagaagtcaggctgataaagtggcccccagtaaaagctcccccatc
aaaaccagctctaaacttgtagctatgaaatggaaggaagaaggtgagaaacaggaatct
gataaaagggcaccgccaagaaaagaaaaagtcgtctccccggtgaaagaagagaaagtt
tctcctaagaagtctgagtctatcagtcctcaggactcggaaaagaaacgtgtcaattac
caggcatatcgaaacttcctaaatcgagagggtcctaaagctcttggttccaaagaagta
ccccagggtgcagagaactgcttggaaggactgacatttgttattacaggggttcttgag
tcattcgaacgtgatgatgtcaagtctctcattgagcggtatggcggaaaggttactgga
aacgtcagtaaaaaaacatcctaccttataaagggtcgagatagtggcaaatctaaagtg
gaaaaagcagagagtttaggtacaaaagtcatttatgaagacggcttgttggatctcatc
cgcaccatgccaggcaaaaaatccaaatacgaagtggcagctgaagtagagttaaaaaga
tcaaagctaaagtctgagagaactcctgaaaagggcccttccaaaaaggctgagcagcaa
agcaaaaaagcaagcccaccagagaaagaagtggagcagaagaagagcagttctcctcca
cagcaaggagagtcgtcgcgatctgggactgccgaagcaaaaaggggcttgtcattcttg
cgcgagcctgacgataagccatccgtgaaggctgaacgctctgcggacttgagtaaagga
aaaacggacagcttactgtgggtggacaagtacaaacccacctctctgaaggctattatt
gggcaacaaggcgatcagagctgtgttaataaactgctgcgttggctcagggattggtat
aagaatcactctggagaccagaaaccagtagcaaagttcagtaaatttgggagcaaggac
aatggttctacttgtaaagctgcattgctgtcgggtcctccgggtgttggaaaaactaca
accgctgctctggtctgtaaggagctgggatacagttacgtggagctgaatgccagtgac
actcgcagcaagaatagcttgaaagaagtagtggccgaatctctgaataacaccagtatc
aaaggcttctattccggaacctcccagtctgtaagtaacgaacatgtactgatcatggat
gaaatagacggaatggcagggaatgaagaccgaggaggaatccaggaaatgattagctta
attaaacagacgaagattcccattatctgtatgtgtaatgatcggaatcatcagaagatt
cgctcattggtccattactgctttgaccttcgtttccagagaccaagagtagaacagatc
aagggtgccatgatgtcgattgctttcaaggaaggcttgaagatcccccctccggctctt
aatgagatcatacttgcagctaaccaggatatcagacaggttttgcataatcttagtatg
tggtgtgcaaaagataaagctttgacgtatgaccaggcaaaagcagatgccagtaaggct
aaaaaagacattaaaatgggtccatttgatgtagctcgcaaggtgtttgcagctggagag
gaaactgctcacatgaccctggtggacaaattggaccttttcttccacgactactcactg
gcgcctctctttgttcaggaaaattacctccatgtgaagccggctgcagcaggtggtaac
ctgaagaggcacctcattttactgagcaaaacagcagacagtatctgtgatggagatctg
gttgatcggcagattcgttcaaagcagacctggagccttctgcctacagaggctatttat
gccagtgtaatccccggggagctaatgaggggatacatgtcgcagttcccaaattttcca
agctggttgggaaaacactcttcaactggtaaacatgatcgtgtcactcaagaacttgca
acgcacatgtctttgagaacgaatgcaagtaagagatccataaatctggactacctgccg
tacctaagagattctctggttaaaccaatggtccatcggggtgtggatggggtacgcgag
acagtagagtttatggatgcctattgcctgatgaaggaggatgttgacaacatcatggag
atcagcacctggagaaacgagcccgatcccttctcgaaacttgaccccaaggtcaaggct
gcttttactcgtacctacaataaagaggctcacctgaccccctactccctgcatgcagta
aaaaaaggtaaacggggtgctggatccgcccttgactcggacttgaatgaggagctgagg
ggcggagatgtccagcagcaagaaaatgaagaggatgacaatattgaaactgacgcaatg
attaagcaaaagaaagtaaaaagctccaagtgtgcaaaggctgaaaaagaggagacgagt
aaagggaaggggaaaggaaagaagacaaagtga
DBGET
integrated database retrieval system
