Latimeria chalumnae (coelacanth): 102358373
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Entry
102358373 CDS
T02913
Symbol
RTCB
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcm03016
]
102358373 (RTCB)
Enzymes [BR:
lcm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102358373 (RTCB)
Transfer RNA biogenesis [BR:
lcm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102358373 (RTCB)
Prokaryotic type
tRNA splicing ligases
102358373 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
102358373
NCBI-ProteinID:
XP_005988685
Ensembl:
ENSLACG00000013033
UniProt:
H3AYT4
LinkDB
All DBs
Position
Un
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLSKNLWRIKKGFVPSMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDADAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCLMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIQS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQRTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIGVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttacaatgatgagctgcagtatctggacaaactcagcaagaacctatgg
aggatcaagaaagggttcgtgcccagtatgcaggttgaaggtgtattttatgtaaatgat
cctctggagaagctgatgtttgaagagctgagaaatgcctgtcgtggtggaggatttggt
gggtttcttcctgccatgaagcaaattggcaatgtggcggcattacctggcattgttcat
cggtcaattggtcttcctgatgtgcactctggttatgggtttgccattgggaatatggct
gccttcgatatgaatgatgcagatgcagtggtgtcaccaggtggtgtcggttttgacatt
aactgtggtgtgcgtctgctgcgcacgaacttggatgagagcgatgttcagcctgtaaag
gaacagctggctcagtccatgtttgatcatatccctgttggagtgggatccaaaggagtc
atccccatgaatgccaaggatctggaggaggcactggaaatgggtgtagactggtctctg
agggaaggctatgcctgggctgaggataaggaacactgtgaggagtatggcaggatgctg
caggctgacccaaacaaagtatcctccaaggctaagaaaagaggcctacctcagcttgga
acccttggtgctgggaaccattatgctgagattcaggtggtagatgatatttataatgag
tacgctgcaaggaaaatgggtatcgaccacaaggggcaggtgtgtttgatgatccacagt
gggagcagggggttgggacaccaagtggcaacagatgctttagtggctatggaaaaagcg
atgaaacgggacaagatcatagtgaatgacagacagctggcttgtgctaggattcagtcc
ccggagggtcaagattacctgaagggaatggcagcagctggcaattatgcctgggtgaac
cgctcttccatgactttcctcaccagacaggcctttgcaaaagttttcaacactacccct
gatgacctggatatgcatgtgatttatgatgtgtcccataacattgctaaagttgaagag
catgtggtggatggcaaacagaggactctgctggttcacaggaaagggtcaaccagagct
ttccctccccatcaccccctaattgcagttgactatcagctgactggacagccagttctg
attggtggaaccatggggacctgcagctatgtattgactggtactgaacagggcatgact
gagacctttggaaccacctgtcatggagctggccgagcactatcccgagctaaatcccgc
cgcaacttggatttccaggatgttttggacaaacttgccgatcagggcatcgctatccgt
gtagcctcaccaaaactagtcatggaggaggccccggagtcctacaagaatgtgactgat
gtggtgaacacctgccacgatgctggcatcagcaagaaagccattaaactgcggcctata
ggagtcatcaagggctga
DBGET
integrated database retrieval system
