KEGG   Latimeria chalumnae (coelacanth): 102358881
Entry
102358881         CDS       T02913                                 
Symbol
LSM1
Name
(RefSeq) LSM1 homolog, mRNA degradation associated
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102358881 (LSM1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102358881 (LSM1)
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102358881 (LSM1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102358881 (LSM1)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 102358881
NCBI-ProteinID: XP_006000422
Ensembl: ENSLACG00000010947
LinkDB
Position
Un
AA seq 133 aa
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHHTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDQEKENETPLQQVSIEEILEEQRGEQQAKQEAEKVKIQALKER
GLSIPRADTLDEY
NT seq 402 nt   +upstreamnt  +downstreamnt
atgaactatatgccagggactgccagcctcattgaggatattgacaaaaaacacttggta
cttcttcgagatggcagaacactaataggatttttaagaagcattgatcagtttgctaac
ttggttttgcaccacacagttgaacgcattcatgtggggaaaaaatacggtgacattcct
cgtgggatatttgttgtaagaggagaaaatgttgttctgttaggagaaatagaccaggag
aaggagaatgaaactcccttacagcaggtatccatagaagaaattctggaagaacagaga
ggggaacagcaagccaagcaagaggcagaaaaagtgaagatccaagcactgaaggaacga
ggactgtcaatccctcgcgctgacacccttgatgaatactag

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