Latimeria chalumnae (coelacanth): 102359341
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Entry
102359341 CDS
T02913
Symbol
NDC1
Name
(RefSeq) NDC1 transmembrane nucleoporin
KO
K14315
nucleoporin NDC1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102359341 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102359341 (NDC1)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102359341 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
102359341
NCBI-ProteinID:
XP_014347850
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All DBs
Position
Un
AA seq
562 aa
AA seq
DB search
MIGKAIHPQQVLHSLVHTVLGLLVAWCTAAMAGGRYQQLTAPCAAEDNRSTSHLICLNEY
HHFLLLAGAFMGYSYSLLYLVNNMSYLPFPTIQQYKYLRFKGVLPLVIKHSAVQSLYSVR
NYCIIYYLIGCIPREWLITSMNLCKDDTLQSLDSLTGLLDFSLLYQTWLCGTFLLVTWYI
TWLLFRIFATEVFCFSIQPSFVEEANQCLPKVLSSNPPPIVKFLALQDFALLSQHSFSRR
QEVFSLSQPGGHPHNWMAISGECLALLSGLTQRLIAHQEAVAANGRMKPHSSYDEPRKSS
SNSGRSFSEDACGRTVSLTPQSILSPAPAPFIKTPLAASLKPTPIAALTPDSGSPFISPI
VNRRAVLLDPSSPWYGSVQSPHVMRRGPKLWTSKSGAPMNGSSNVFEPTPVLVRRGPADA
EKTNFFSVWFQRKQDQVKTFLAKRVLVMYLFSKHPETSSQALFADSQTHIWALEGLSHLV
SASFTEDRFGVVQTTLPSILSTLLTLQEAVDKHFKLPHASSKPARSSGSLVDTSYKTLRF
ALRASLKTAIYRITSTFGEHLK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgattgggaaggcaatccacccccagcaggtcctccattctcttgtgcataccgtgctg
ggactgctggtggcctggtgcactgcagcaatggccgggggtcggtatcagcagctcacc
gcgccctgcgcagctgaagacaaccgcagcaccagccatctgatatgcctgaatgaatac
catcacttcttattgcttgctggtgccttcatgggatacagctacagccttctttattta
gtgaacaacatgagctatctgccttttcctactatacagcaatataagtacctgcggttc
aaaggagttttgcctcttgtaataaaacacagtgctgtgcagtctctgtattcagtcaga
aattactgcattatctattatttaataggctgcatcccacgagaatggctaattacatca
atgaacctttgtaaagacgacacactacagtcacttgacagtctgacaggactgctggat
ttctctctgctctatcagacctggctatgtggtacttttctccttgtaacatggtatatc
acttggctacttttcagaatttttgcaactgaggtcttttgtttttctatacagccatct
tttgtagaagaggcaaaccagtgtcttcctaaagtcctgagcagcaacccccctcctatt
gtgaagtttctagcactgcaggactttgctcttttgtcccagcattctttttctcgaagg
caagaggtctttagtcttagccagccaggcggccatcctcataactggatggcgatctca
ggggagtgtttggccttgttaagtggtttaactcaaagactgattgcccaccaagaggca
gtagctgccaatggaagaatgaaaccacactcgagttatgacgaaccaaggaaatcctca
agcaattcaggaaggtccttcagtgaagatgcttgcggtcggacagtgtctttgacacca
cagtccattctatctcccgctcctgcacccttcattaaaaccccgctagccgcctcttta
aaaccaacaccgattgctgctttgactccagattcagggagcccatttatttcccctata
gtgaaccgtagggctgtcctgctggatcccagctctccttggtatgggtctgttcagagc
cctcacgtaatgagaagaggaccaaagctatggacctcaaaatcgggggctccgatgaat
ggatcttcaaatgtttttgaaccaaccccagtcttggttcgtaggggtcctgcggatgca
gaaaaaacaaatttcttttctgtgtggttccagagaaagcaagaccaggttaaaactttc
ttggctaaacgagtgctggtaatgtatttattcagcaagcatccagagacctcaagtcag
gctctctttgctgatagccagactcacatttgggcacttgaaggcttgtctcatctggta
tccgcttcattcacagaagataggtttggtgttgtgcagaccacactgccgtctattctc
agcacgttgcttaccctacaagaggcagtggataagcacttcaaactacctcatgcttct
agcaaaccagctcgatcctcagggagtttggtggacacctcttacaaaacactgaggttt
gcgctaagagcttcattgaaaactgcaatctacaggataaccagcacttttggggaacat
ttaaagtaa
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