Latimeria chalumnae (coelacanth): 102359866
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Entry
102359866 CDS
T02913
Symbol
NCBP1
Name
(RefSeq) nuclear cap binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03013
Nucleocytoplasmic transport
lcm03015
mRNA surveillance pathway
lcm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102359866 (NCBP1)
09122 Translation
03013 Nucleocytoplasmic transport
102359866 (NCBP1)
03015 mRNA surveillance pathway
102359866 (NCBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102359866 (NCBP1)
03041 Spliceosome [BR:
lcm03041
]
102359866 (NCBP1)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
102359866 (NCBP1)
Spliceosome [BR:
lcm03041
]
Common components
Common spliceosomal components
Cap binding complex
102359866 (NCBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
Motif
Other DBs
NCBI-GeneID:
102359866
NCBI-ProteinID:
XP_014345372
Ensembl:
ENSLACG00000013955
LinkDB
All DBs
Position
Un
AA seq
757 aa
AA seq
DB search
MSRRRHSDENDGGQPHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKSKILRILCAVARMLPEKLTVYTTLVGLLNARNYNFGGEMVEAMVRQLKECLKANI
YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFISVTQEEDVPQVRCDWYVYAVLSSLPWV
GKELYEKKDVEMDRVLAQIESYLKRRQKSHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYLAFDSVLCEALQHNLPPFTPPPHTEGSIYSMPRVVFRLFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLLSYPGKSKIPLNYHIVEVIFAELF
QLPTPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCIDRFINWFSHH
LSNFQFRWSWDDWADCLVPDLEKPKPKFVREVLEKSMRLSYHQRILDIIPANFSALAPAN
PSCIYKYGDESNSSLPGYNVALSISTAIKNKATNEEILSILRDVPNPNQDDDDDEGFSFN
PLKIEVFMQTLLYLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVLYEVWKNHPQY
VYYALIPVDAEIDSPDSPLDPFSRCVSLLISKLILQRDSDDDDDDRDSDEEDGPLEEQIE
RLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETGGIDFSTPWYKNCIERLQQIFLQ
HHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQS
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaggagacacagcgacgagaacgacggaggacagccgcataaacggaggcga
acatctgagcctattgaaatcgaagaccgcttagaatctttaatatgcagagtaggagaa
aagagtacatcttctttggagagcaacttagaaggcctggcgggagtcctggaggctgac
ctgccaaattacaaaagcaagatcttgagaattctttgtgccgtggctcgtatgttgcct
gagaagctgaccgtttacactacgctggttgggcttctgaatgctaggaattacaacttt
ggtggggagatggttgaagctatggtccgtcaactcaaggagtgtctgaaagctaatatc
tacaatgaggctgtgtacttagtgcgatttttgtctgaccttgttaactgtcacgtgatt
gctgctccttcaatggtggccatgtttgaaaactttatcagtgtaactcaagaagaagat
gtgcctcaggtacgctgcgactggtatgtttatgctgttctttcctctctgccctgggtt
gggaaggaactatatgagaagaaggatgtggaaatggaccgtgttctggcacagattgaa
agctatctgaaaagacgccagaaatctcatgtaccaatgttgcaggtgtggacagctgaa
aaacctcatccccaggaggagtacttggattgcttgtgggctcagattcagaagctgaag
aaagatcgctggcaggagcggcacattttgaggccataccttgcctttgacagtgtgctg
tgtgaggccctgcagcacaacctgcccccgtttactcctcctccgcacacagagggctcg
atctactccatgcctagggttgtcttcagactgtttgattacaccgatgcccctgagggc
ccagttatgcctggcagccattctgttgagagatttgtgattgaagagaatctgcactgc
attatcaaatcccactggaaggaaagaaaaacatgtgctgcacagttgttgagctatcca
gggaagagcaagattcctctgaattatcacatagttgaggtcatctttgcggagctcttt
cagctgcctacgccaccacatatcgatgttatgtataccacactactgattgaactctgt
aaactgcagcctggctccttgccacaagttcttgctcaagccacagagatgttatacatg
cggttggacacaatgaatacaacatgcatcgataggtttattaactggttctcccaccat
ctgagcaactttcagttccggtggagctgggatgattgggctgactgtcttgttccagac
ctggaaaaacccaaaccaaagtttgtacgggaggtgttggaaaaatcaatgaggctttca
tatcaccaaagaatattggatattattcctgccaacttctctgctttagctccagcaaac
ccatcgtgcatctataaatatggagatgaaagcaacagttctcttcctggctacaatgtt
gcccttagtatcagtaccgctattaaaaacaaagcgaccaatgaggagatcctgagtatc
ttacgggatgtccccaatccaaaccaggatgatgatgatgatgaagggttcagttttaac
cccttgaaaatcgaggtgttcatgcagacgttgctttacctggcagccaagtccttcagc
cattccttcagtgctctagccaagttccatgaagtttttaagaccctggctgaaagtgat
gagggcaagctgcatgtcttgagggttctatatgaagtttggaaaaatcatccccagtac
gtctattatgcccttataccagttgatgctgaaattgactcccctgattcccctcttgat
cctttctcgaggtgtgtctctttattaataagcaagcttattttgcagagggatagtgat
gatgatgacgacgaccgagacagtgatgaagaggatgggcctttggaagagcagattgag
cgtctgcaggaaaaagtggagtcggctcagagtgaacagaagaacctcttcttagttata
ttccagcgtttcataatgatcctgactgaacacctggtgagatgtgaaactggaggcatt
gattttagcactccttggtataaaaactgcatagagagactgcagcagattttcctacag
catcatcagataatccagcagtacatggtgaccttggagaacttgctgttcacagctgag
ctcgacccccacatcctggctgtgttccagcagttctgcgctctgcagtcttga
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integrated database retrieval system
