Latimeria chalumnae (coelacanth): 102359882
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Entry
102359882 CDS
T02913
Symbol
TNRC6B
Name
(RefSeq) trinucleotide repeat containing 6B
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102359882 (TNRC6B)
03036 Chromosome and associated proteins [BR:
lcm03036
]
102359882 (TNRC6B)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102359882 (TNRC6B)
Chromosome and associated proteins [BR:
lcm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102359882 (TNRC6B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
HIT
Ago_hook
RRM_occluded
DcpS_C
RRM_1
Motif
Other DBs
NCBI-GeneID:
102359882
NCBI-ProteinID:
XP_014347473
LinkDB
All DBs
Position
Un
AA seq
1961 aa
AA seq
DB search
MQADEGAKPEETRSKMEHEDLGMEGHGKTPPACEENTRREKEQEREEQLMEDKKRKKDEK
KKKETAQKVTEQKTKVPEATKPSLSQPPGAVPIGTAPAPPVNGGNNAKRAAVPNGQPPST
ARYMPREVPPRFRCQQDQKVLLKRGQALPPSCMLLGGGGAGPTPSVPGANPSNNNAHQVP
TAALQGDYGTTEINPGSAAASNYANSTWSPGGPSSSPSAAANPTHGWDKVIVDGSDMEEW
PCIASKEAESSPSSETTDDNNSASTPGSEKTAAPGCNAGGKGKAANLCQTGSAGNECTLG
AWNSGLKPKAVQSSNSAPAEGNSGLGNWKNLSGQDRTGPGSGSSNFNPNTNPSAWPALVQ
EGCSKKGASESESGNSNPQPGTAAGQASREQLSKTDNAGVTWSASSREQAQTANTDGPKS
GNTNSTNLSSPNPMENKGIPFGLGLANPARSTDAPSQSTGDRKGGGIGSWNAARGSSTAD
AISGQTSSGNAGNSGRGREDSWKAGSSQKPNGSRIDSWDGASRPAGSGSWNLGTQDSNEN
KHWGEGNKTVSGVSQGVWKQPSAPEELTIGEWSGSNQPNSSTGAWDNQKGHFLPESQGSS
QAPCWGRSSSSAGSEVGGQSTGSNHKTGSTDSHASGRRPSRPVSSDPQVALQSFLSRTDL
DPRVLSNSGWGQTQIKQNTTWDDLPPKSIGKSDKGTEGWESNTTQTKNSGGWGDPPGQSN
QAKSGWSDPSTPTEWKDSKSEGNWSEYKNNPSWGGGGRQEERTSSSWNDGTSSSKDQGWS
GRPANHGWASGKNGWGDDTNQPKSAGWDNPGGKPAPSWGESGQNEIGTRGGGANGAPGPR
SGWEDPSRSQSWGEPPKQANSWNKQQPPPPLQQQEAPGSWGPPSGSGSSGSGLPNTSWSS
GPMPTPVVSKDEEPSGWEEPSPQSISRKMDIDDGTSAWGDPSSYNYKNVNLWDKNSQGTP
PVSRDQNLGGTMPSKAASSVWNESTPPSQAVDNGTDVWGKPTKVNAEWGDSENTTASTTG
GWGNSPANPTNAIQTGSKSMQDGWVDSDSSVAGTRHSSWEEEEEGGVWNSAGSQGSGSSY
SSANWGQGGKKPQNKGSLKGGSGDAWMNPLSKQFSNMGLLSQADDTTNNKLDLSVGGHPD
KKLDSDKRAMNLGDYNGIIRKERSGFRPPNSKDMGPADSGPYYEKLTLPFSNQDGCLGDE
VPCSPCSPFSPTPSYKLSPSGSTLPNIGLGAIGSGLNPQNFSVRQSSITKSISRPPSPPP
PRIMATLRFGQHLIRPSAVFLQTDLSFALVNRKPVVPGHVLVCPLRPVERFRDLRPDEVA
DLFRAAQQVAGAVETHYRGTSLTLALQDGPEAGQTVRHVHVHILPRRAGDFARNDSIYEE
LQKHDRETEELPSQWRSEAEMACQLFLQQQQQQQQQQQLLNQRKISQAVRQQQEQQLARM
VSALQQQRQSAMKHSPSQSGSKQHLDSMVPNALNMGLSDLQTKGQIPGYSPGLAPNLNLN
PLDFNSMVGGKDVSGQQSRFKQWTSMMDGLPQPSSPQDPSMHKNGAVVPPGKPRGGSPYS
QYDLMPGEGLVVGHPVPNPDSWLPAKSPPTSKLGSKPSNASWPPEFQPGVPWKGIQNIDP
ESDPYVTPGSILGGSMASPGLDTDHQLLRDNTESSSSLTTSLPSPGAWPYTASESSFSNV
PSTSAKFNDLKSTWSLDPIGHNPTSHKMWRNPTSSRSTTSLPRPPPGLTNQKHPSSSPWS
SVATRVTRGWGGQDTRYPPGSAWSDAGAVRASCWLVLHNLTPQIDGSTLRTICMQHGPLL
TFHLNLTQGTALIRYNSKQEAAKAQTALHMCVLGNTTILAEFAPEDEVNRYFAQAPTPPT
PSGPSTGWQTLETGQSQPDPVGQGLNLFGGSTGLGQWSSGSGGRPAVGGTGGADLPGESL
WGAPSYTSSLWGAPTVEDSHQMGSPASLLPGDLLGGGSDSI
NT seq
5886 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccgatgagggagcgaaacctgaagaaaccaggtcaaagatggagcatgaggat
ttggggatggagggacatggcaagacgccgcctgcgtgtgaagagaacactcgcagagag
aaggagcaagaaagggaggagcagttaatggaagacaagaagaggaaaaaagacgaaaag
aagaaaaaagaaactgctcagaaagttacagaacaaaaaaccaaagtgcccgaagcaacg
aaaccaagtctaagccagccgccgggcgccgtcccgattggcactgccccagcgccaccc
gtcaacgggggcaacaatgccaagagggcggcagtgccgaatggccagccgccgagcacc
gcccgctacatgccccgggaggtgccacccagattccgttgccagcaggaccagaaagtg
ttactgaagcgtgggcaggccctgccgccctcctgcatgctccttggggggggtggggcc
gggcccactccctccgtccctggagccaaccccagcaacaacaacgcacatcaggttccc
actgctgcgttacagggggactacgggacaacagagataaatcctggaagtgctgctgct
tcaaattatgcaaattccacttggagccccgggggcccctccagcagtccctctgctgct
gccaaccctacgcacgggtgggacaaggtgattgtagacgggtctgacatggaagaatgg
ccttgcattgccagcaaagaagcggagtcgtcgccatcttcagaaaccacagacgacaac
aatagtgcctcaactcccggctcagagaagactgcagccccggggtgcaatgccggcggc
aaggggaaggcagcaaacttgtgccagactggaagtgctgggaatgaatgtaccctcggg
gcctggaattcaggcctgaagcccaaagccgttcaatcttccaactctgccccggcagag
ggcaacagtggactcggaaattggaaaaacttgagtggccaggaccggaccggccccggt
tctggttccagcaactttaacccaaataccaacccctctgcctggccggcactggtccag
gaaggttgctccaagaaaggagcttcggagtcggagagtggcaactccaacccacagccg
ggcacagccgcgggtcaagccagtcgggagcagctctccaaaacggataatgcgggtgtt
acatggagcgcgtccagccgagagcaggctcagactgcgaacactgatggaccaaaaagt
ggaaacactaactccacaaacttaagctcgccaaaccccatggagaataagggaataccc
tttgggctgggcttggccaatccggccaggagcactgacgccccttcacaaagcactggc
gacagaaagggagggggcattgggtcttggaacgctgctagggggtcttctacagccgat
gcaatctctggtcaaactagttctggtaatgcagggaacagcggcaggggcagagaggac
tcttggaaggccgggtcttctcaaaaacccaatggttctaggattgattcttgggacggg
gcttccaggcctgcaggtagcgggtcttggaacttaggcacgcaagactccaatgagaac
aagcattggggtgaagggaacaaaacggtttctggggtctctcagggagtttggaagcaa
ccgtctgcgcccgaagagctgacaattggggagtggagtggttccaaccaaccaaattct
agcactggagcatgggacaatcaaaaaggtcacttccttcctgaaagccaaggcagttct
caggctccctgttggggcaggtcttccagctcggcgggaagtgaggttggaggtcagagc
actggaagcaaccacaagacagggagtactgacagccacgcgtctgggcgccggcccagc
agaccggtgagttcggatccccaggtggccttgcagagctttctgagcaggactgacctt
gacccccgggtgctttcgaactccgggtggggtcaaacccagatcaagcaaaacacaacc
tgggacgatttgccgcccaagagcatagggaagtcggacaaagggacagaagggtgggag
agcaacaccacacagacaaagaactcagggggctggggagacccacccggccaaagcaat
caagcaaagtctggttggagtgatccctcaaccccaacagaatggaaggattccaaaagt
gaaggcaactggagtgaatacaagaacaatcctagctggggaggaggaggaaggcaagag
gagagaacatcatcttcttggaatgatgggactagtagtagcaaggatcaggggtggagt
gggagaccagccaatcacgggtgggcctctggaaagaacggttggggcgatgataccaat
caaccaaaatccgctggatgggacaacccagggggcaagccagcacccagctggggagaa
agcgggcagaatgagattggaactcggggtggtggagccaatggagccccgggtccaaga
agcgggtgggaggatccttcaaggtcccagagttggggtgagccgcctaaacaagccaat
tcatggaacaagcagcagccgccaccaccactgcagcagcaggaggcccccgggtcttgg
ggtccaccatctggaagcggcagcagcggcagtggtctccctaacacaagctggagcagt
gggccgatgccaacacctgtggtctccaaggacgaggaacccagtggctgggaagagcct
tctccacagtccattagccggaagatggacatagatgatggcacttcagcctggggtgac
ccgagcagctacaactacaaaaacgtcaacctgtgggacaagaactcgcagggcacacca
ccggtatcacgagaccagaacctcggaggtaccatgccaagcaaagcagcaagctcagtt
tggaacgaaagcacaccaccttctcaagctgtggacaatggtacagatgtgtggggcaag
ccaaccaaggtcaacgcggagtggggcgactcagagaatacaaccgcttcaaccaccgga
ggctggggaaactccccagcaaacccaaccaatgccatacaaaccggttcgaaatctatg
caagatggctgggttgacagtgacagttcggttgcaggaacgcgccattcaagctgggag
gaggaagaggagggtggtgtctggaacagtgctggctcacagggtagcggatcctcttac
agctccgccaactgggggcaagggggcaaaaagccacagaataagggttccctgaaggga
gggagtggagatgcatggatgaaccccctttccaagcagttctccaacatgggtttgctg
agtcaagctgatgataccacaaacaacaagttagacttatctgtcggtggccatccagat
aagaagttggactcggacaaacgggccatgaaccttggggactacaatgggatcatccgg
aaggagcgatctgggttccggccacccaattccaaagacatgggacccgccgacagcggg
ccttattacgagaagctgaccttgcctttctccaatcaagatgggtgccttggggatgag
gtcccttgctcaccctgttcgcccttctcccccacccccagctataagctatccccctcg
ggttccacattacccaacattgggctcggggccatcggctcggggcttaaccctcaaaac
ttcagcgttcgacaatcgtcaattaccaaatcgatttcgagacccccttcccctcccccc
ccccggatcatggcaacactccgattcgggcagcacctgatcaggccctccgcagtgttc
ctgcagaccgacctgtccttcgcactggtcaatcggaagccggtggtgccgggccacgtg
ctggtctgcccgctgcggccggtcgagcggttccgggacctgcgacccgacgaggtggcc
gacctgttccgggcggcccagcaggtggccggcgcggtggagacccactaccgggggaca
tcgctgaccctcgccctgcaggatggccccgaggccggccagacggtcaggcacgtccac
gtgcacatcctcccacggagggccggagacttcgccaggaacgacagcatctacgaggag
ctgcagaagcacgaccgggagaccgaagagctgcctagccagtggaggtcggaggcagaa
atggcttgtcagctgttcttgcagcagcagcagcagcaacagcagcaacagcagctgtta
aaccagagaaaaatctcccaggctgttcgacagcagcaagaacagcagcttgcccgtatg
gtgagtgccctgcagcaacagaggcagtcagccatgaagcactctccctcgcagtccggc
agcaaacagcacttggacagcatggttcctaacgcactgaacatggggctttctgacctg
caaaccaaaggacagataccaggatacagcccaggtctggccccgaacctgaatctcaac
cccctggattttaacagcatggtgggcgggaaggatgtgagtggccagcagtcccgattc
aagcagtggacatccatgatggatggattgcctcagccctcctcaccgcaggatcccagt
atgcacaaaaatggtgctgttgtcccccccggaaagccccgaggtggatctccctacagt
cagtatgatctgatgccgggtgaagggctggtggttggacatccagttcctaaccccgac
agctggctgcccgccaaatcgccgccgaccagcaagctagggagcaagccaagcaatgcc
agctggccgccagaattccagccaggggtaccatggaaaggtatccagaacattgaccct
gaatctgacccttatgtgaccccggggagcatcctaggggggtcaatggcatccccaggt
ttggacactgaccaccagctgctgcgtgacaatacagagtctagctcttccctgaccacc
tcactgccttcacccggtgcctggccctatactgcctctgaaagttccttttccaacgta
cccagcacttcagcaaagtttaatgatttgaagtctacatggtctctggatcctatcggg
cacaaccccacctcgcacaaaatgtggcgaaaccccacctcctccaggagcacgacgtcg
ctgccccgtccaccacccggcctgaccaatcagaaacacccatcttcatctccttggagc
agtgtggcaactcgagtgacgaggggctggggagggcaggacacccgatacccccctggc
tctgcctggagtgatgcaggtgcagtcagggcaagctgttggctggttcttcacaacctc
actccccagatcgacggctctaccctacggacaatctgtatgcaacacggccctctgctt
acattccatttgaacctgacacaaggcacggcgctgatccgctacaacagcaaacaggag
gcggccaaggcacagaccgccctgcacatgtgtgtgttaggaaacactaccatactcgct
gagtttgcgccagaagacgaggtcaaccgctacttcgcgcaggcccccacaccgccgacc
ccctcggggccctcgacgggctggcagacactggagactgggcagagccagcccgacccg
gtggggcagggactgaaccttttcggcggctcaacgggcctcgggcagtggagcagtggc
agtggcggccggccagcagtgggcggcaccggtggcgcggacctgccaggcgaatcgctg
tggggggccccaagttacacctctagcttgtggggggccccaaccgtggaagacagccac
cagatggggagtcctgcttctctgctacccggggaccttcttggaggaggatcggattca
atctaa
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