Latimeria chalumnae (coelacanth): 102360030
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Entry
102360030 CDS
T02913
Name
(RefSeq) hypoxia-inducible factor 3-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm04137
Mitophagy - animal
lcm04140
Autophagy - animal
lcm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102360030
04137 Mitophagy - animal
102360030
04148 Efferocytosis
102360030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcm03000
]
102360030
Transcription factors [BR:
lcm03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
102360030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
102360030
NCBI-ProteinID:
XP_005996095
LinkDB
All DBs
Position
Un
AA seq
775 aa
AA seq
DB search
MMLFKSFSCEMETDWSPTEQRKEKSRDAARCRRSKETEVFYELAHTLPFPRGVSSHLDKA
SIMRLTISYLRISKLMAANKVKTEPELDGPNDIYYLKALEGFVMVLTEEGDMVFLSENVN
KHLGLAQLELIGHSVFDFVHPCDLEELKDMLCPRQGFSKKKKEVNTERSFFIRMKSTLTS
RGRTVNLKSASWKVLQCTGHMKTYTSSEHPEDGYPDLPMTYLIMTCEPIPHPSNIEVLLD
SRTFLTRHNMDMKFTYCDERITELAGYHPDELIGQSAYEYFHALDSDPLSKCIHVLLSKG
QAVTGLYRFLTREGGYMWTQTQATVIYNSKNSQPESIVCLNFVVSGIEEKDVVFSLEQRE
SQLKPIVKILEKRQSNAMGADTKEDLFTKLKEDPEELTQLAPTPGDTIIPLDFSLTDCKE
PKVFAFVKPPDVSDAVFSATPEKFCSPELRKLLLPIFEPIKQEPDPEPRGEVPKPPSTPP
VPAVPITADTKDTSFLVSSGEEFNLEMENVQKLFATNKEAQDTDISQDFASLDLEMLAPY
ISMDDDFQLTVMDQQEAKPLKEDDALPQLNADPLLSSTMRPEAWDNPVLRPRSSSFNGDQ
AQVLPAQPKSCGGSMTIINQQEQLADEANGVKDTVETEVTTSPQKSGVMRGATLSSPAKK
RPLDLEDGLNSEALSVQNVKRRHCSGSEEFLVPSASLGSLFDTNIEEAPAEKSAKDKPQT
IITPAALVQKLLFLSSEDSVLPDITSYECGAASPLQSSRHLIQVEDLLRVLDQTT
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgatgctttttaagtccttcagttgcgaaatggaaacagattggtcgcccacggagcag
aggaaggagaagtcgcgggatgcagcacggtgtcgccgcagcaaggaaacggaggtgttt
tacgagctggcccacacgctgcccttcccccgcggagtcagctcccacctggacaaggca
tccatcatgaggctgaccatcagctacctgagaataagcaaactcatggcagcaaataaa
gtgaagactgaaccggagctggacggaccaaatgacatctattacctgaaggctttggag
ggttttgtgatggttctgacggaggaaggggatatggttttcctgtctgagaatgtaaac
aagcacctggggttggctcagttggaattgattggacacagtgtgtttgatttcgtccac
ccctgtgacctggaggagttgaaggatatgctgtgtcccaggcaagggttctcgaagaag
aagaaggaagtaaatacggagcgcagtttcttcatccggatgaaaagtactctgaccagc
cggggccggactgtcaacctcaagtctgcaagctggaaggttctgcaatgcactggacac
atgaaaacctacacctccagtgaacatcccgaggatggctaccctgatcttccaatgacc
tacctgatcatgacctgcgagcccatcccccacccaagtaacattgaggtcctgctggac
agccgaaccttcctgacccgccacaacatggacatgaaattcacctactgtgatgagagg
atcacagaactggcgggatatcaccctgatgagctgattggtcagtctgcgtacgaatat
ttccacgcgctcgactccgacccattgtccaagtgcatccatgtcttgctgagcaaaggg
caagctgtcaccgggctgtatcgatttctcaccagggagggcggctacatgtggactcag
actcaagccactgtcatctacaacagcaagaactcacagcctgagagcatcgtgtgcctc
aactttgttgtgagcggaatcgaggagaaggatgtggtgttctctctggaacagagagag
agccagctcaagcccatagtcaagatcttggagaagagacagtccaatgccatgggggcc
gacaccaaggaggaccttttcaccaagttgaaggaggaccccgaagagctcactcagctg
gcgccaacgcctggtgacaccatcatccctctggatttcagcctaaccgattgcaaggag
ccgaaggtgtttgcttttgtgaagccgcctgacgtaagtgacgccgtcttctcggccacc
ccggagaagttctgcagccccgagctcaggaagctgctgctccccatctttgaacccatc
aagcaggagccggacccggaaccgagaggtgaagtgccgaaaccacccagcacaccacct
gtcccggccgtccccattacagccgacaccaaggatacctcctttttggtgagcagtgga
gaggaatttaatttggagatggaaaatgttcagaagttatttgccaccaataaggaagcc
caggatactgacatttctcaggattttgccagtttggatttggagatgctggctccatac
atttccatggatgacgatttccagctcactgtgatggaccagcaggaggccaaaccactc
aaggaagatgatgcattgccccagctcaacgcggaccccctgctcagcagcaccatgcgc
cctgaggcctgggacaaccccgtgctccgaccccgttccagcagtttcaacggggatcag
gctcaggtactgccggctcagccaaagtcttgcgggggcagcatgaccattataaaccag
caagagcaactggcggacgaagccaatggcgtgaaggatactgtggagaccgaagttact
acaagtccgcaaaagagtggagtgatgagaggtgctaccttgagctcacctgccaagaaa
agacccctggatctggaggatgggttaaattccgaagcgctgtctgtccagaatgtaaag
cgcagacattgttctgggagcgaagagttcttagtgcccagtgcttctctgggttccttg
tttgacaccaacattgaagaggcccctgcggagaagtctgctaaagacaagccacaaacc
atcataacgccagcggccttggtacagaagctcctgttcctgtcttcggaggattccgtc
ctgcctgacatcaccagctacgagtgcggggcggcctcccctcttcaaagcagccgccac
ctgatccaggtggaggacctgctgagggtgctggaccagaccacctga
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