Latimeria chalumnae (coelacanth): 102360055
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Entry
102360055 CDS
T02913
Symbol
TAF5
Name
(RefSeq) TATA-box binding protein associated factor 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102360055 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcm03021
]
102360055 (TAF5)
03036 Chromosome and associated proteins [BR:
lcm03036
]
102360055 (TAF5)
Transcription machinery [BR:
lcm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102360055 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
102360055 (TAF5)
Chromosome and associated proteins [BR:
lcm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
102360055 (TAF5)
STAGA complex
102360055 (TAF5)
TFTC complex
102360055 (TAF5)
SAGA complex
102360055 (TAF5)
SLIK complex
102360055 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
WD40_like
PROPPIN
CDK5RAP3
eIF2A
Beta-prop_ELP1_1st
Urb2
Motif
Other DBs
NCBI-GeneID:
102360055
NCBI-ProteinID:
XP_014349748
Ensembl:
ENSLACG00000002684
LinkDB
All DBs
Position
Un
AA seq
670 aa
AA seq
DB search
MAFVRREEEFGIIDDDDDDDEFSFRVIDEEEFGVTDDDEFKCVDALRSPICFVAAAVSAS
NAEDQPDVSAVLSAYNQQGDPALYEDYYSNLKKFVESVLDCHRAELSQLFYPLFVHMYLE
LVYNQHESEAKSFFDRFHGDQECYYHDDLRVLSSLTKKEHMKGNETLLDFRTSKFVLRIS
RDSYQLLKRHLQERQNNQIWSIVQEHLYIDIFDGMPRSKQQIDAMVGSMTGEAKRDANKG
KIFFGLLKEPEIELPLDDEDEEGENEEGKPKKKKPKKDSMGSKSKKQDPNAPLQNRIPLP
ELKDSDKLDKIMNMKESTKRLRLGPECLPSICFYTFLNAYQGLTAVDVTDDSSMIAGGFA
DSTVRVWSVTPKKLRSVKTASDLGLIDKESDDVLERIMDEKTASEVRILHGHSGAVYGIS
FGPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFISGGHDRIAR
LWATDHYQPLRIFAGHLADVTCTKFHPNSNYVATGSADRTIRLWDILNGNCVRIFTGHKG
PIHALMFSPNGKFLASGATDGRVLLWDLGHGMLIGELKGHTDTVYALCFSRDGEILASGS
MDNTVRLWDAVKVFEDLETDDFTTATGHINLIDNSQELLLGTYMTKSTPVTHLHFTRRNL
LLAVGAYNPQ
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcctttgtgagaagggaagaggagtttggaataattgatgatgatgatgatgatgat
gagtttagttttagggtaattgatgaagaggagtttggagtaactgatgatgatgagttt
aagtgtgtggacgccctccgctcaccaatctgttttgttgccgcagctgtttcggcctcg
aatgcggaggaccagcccgacgtcagtgctgtcttgtctgcctacaaccagcagggggac
ccggctctgtacgaggactactacagcaacctgaagaagtttgtcgagtcggtgctggac
tgtcatcgggccgagctctcgcagctcttctaccctctctttgtacacatgtacctggag
ctggtctacaaccagcacgagagcgaggccaagtcgttctttgacaggttccacggcgat
caggaatgttactaccatgatgacctgcgggtgctgtccagcctgaccaagaaggagcac
atgaaagggaacgagactctgctggacttccgcaccagcaagttcgtgctgcgcatctcc
cgcgactcctaccagctgctgaagcgccacctgcaggagcggcagaacaaccagatctgg
agcatcgtgcaggagcacctgtacatcgacatcttcgacgggatgccccgcagcaagcag
cagatcgacgccatggtggggagcatgactggcgaggccaagagggacgccaacaagggc
aagattttcttcgggctgctaaaggagccagaaatcgaacttccgctggacgatgaggat
gaggaaggggaaaacgaagaaggcaaaccaaagaagaaaaagccaaaaaaagacagcatg
gggtcgaagagcaagaagcaggatcccaatgcacctctgcaaaacagaattccgctccca
gagctgaaggactcggacaagcttgataaaataatgaacatgaaggaatcgacgaaacgt
ctccgtctgggtcccgagtgtctgccttccatctgcttctacaccttcctaaacgcttac
cagggtctcacagcggttgacgttacagatgattccagcatgattgcgggaggctttgcc
gactccacggtccgtgtttggagcgtgactccgaagaagttgcgcagtgtaaaaacagca
tcagatctcggcctgatagataaagagtcggacgacgttctggagcggatcatggatgag
aaaacggcgagcgaggtccgaattcttcacggccacagcggcgccgtctacggaatcagc
ttcggcccagacagaaactacttgctgtcgtcttcggaggatggcactgtccggctctgg
agtctccaaaccttcacctgcttggtgggatacaaaggacacaactaccctgtgtgggac
acgcagttctctccatatggctactattttatatcaggaggacatgaccgaattgcacgt
ctgtgggctactgatcattaccagcccttaaggatatttgctggccacctggctgatgtc
acctgcaccaagttccaccccaactcgaactatgtggccacgggctcagccgacaggaca
atccgtctctgggatattctcaatggcaactgtgttcgaatcttcactggacataagggc
ccgatccacgccttaatgttctcccccaatgggaagttcctggcctcgggggctacggac
gggagggtgctcctctgggatttggggcacgggatgctgataggggagttgaaggggcac
acggacacagtctacgccctctgcttcagccgggatggggagatcctcgcctcaggctcg
atggacaatactgtacgactgtgggacgcagtgaaggtgtttgaagacttggagacggat
gacttcaccacggcgacggggcacataaacctgatagacaactcgcaggaactgctgttg
ggcacctacatgaccaaatccacccccgtcacccacctccacttcacacgcaggaatctc
ttgctcgctgtgggggcctataaccctcaataa
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integrated database retrieval system
