Latimeria chalumnae (coelacanth): 102360187
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Entry
102360187 CDS
T02913
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102360187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102360187
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102360187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_IV
MutS_III
AAA_27
T3SS_needle_reg
Motif
Other DBs
NCBI-GeneID:
102360187
NCBI-ProteinID:
XP_006009848
Ensembl:
ENSLACG00000000560
LinkDB
All DBs
Position
Un
AA seq
457 aa
AA seq
DB search
LILRTCCSASLTTEDVLNGDVEHVDQTGLEAGKTVKLESNAQLGYFFRVTCKEEKTLRNS
KKFTTIDVQKNGVRFTNSKLSSFNEEYLKSKEEYEEAQNAIVKEIINISSGYVEPLQTLN
DVIAQLDAIVSFAYVSNGAPVPYVRPAILEKEQGHILLKASRHPCIEVQDEVAFIPNDVT
FEKSKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEISIVDCILARVGAGD
SQLKGVSTFMSEMLETASILRSATKNSLIIIDELGRGTSTYDGFGLAWAISEYISTKINA
FCMFATHFHELTVLADQVPAVNNLHVTALTTDETLTMLYRVKKGVCDQSFGIHVAELANF
PKHVIENAKEKALELEEFQNISRSEDPDEEPAAKKCFLEKEEGERIIHEFLSKVKSLPIS
EMSEDDVKKEMKILKAGVLARNNSFINNIISRIKMST
NT seq
1375 nt
NT seq
+upstream
nt +downstream
nt
attgatattgagaacttgttgttcagcaagtttgaccacagaggatgtcttgaacggaga
tgtagagcacgtggatcaaacaggcctcgaggctggcaagactgtgaagctggagtcgaa
tgcacaattaggctacttcttccgagtcacttgcaaggaagaaaaaaccctgcggaacag
caaaaagttcaccactatagacgtccagaaaaatggggtgcgatttactaacagcaagtt
gagttccttcaatgaagaatacctaaagagcaaagaagagtatgaagaagcccagaatgc
cattgttaaagagatcattaatatctcctcaggatatgttgaacccttgcaaacactcaa
tgatgtgattgctcagctggatgcaattgtcagttttgcttatgtatcaaatggtgctcc
agtaccatatgtccggccagccattctggagaaggaacaagggcacatcctactgaaggc
ctccaggcacccctgcatcgaagttcaagatgaggttgcatttattcccaatgatgtcac
cttcgagaagagcaagcagatgttccatattattacaggccccaacatgggaggtaaatc
aacctatatccgtcagaccggtgtgattgtccttatggctcagattggttgttttgtacc
atgcgattcagcagagatcagcattgtggactgtatcctggctcgcgttggcgctgggga
tagccagttgaaaggagtgtccactttcatgtctgaaatgttagaaactgcctcgatcct
caggtcagcaactaaaaactccttaatcatcattgatgaattgggaagaggaacatctac
gtatgatgggtttggtttggcctgggccatctcagaatacatttccaccaagattaatgc
tttctgtatgtttgctacacactttcatgagctgacagtgcttgctgatcaagtgcctgc
agtcaataatctgcacgtcaccgcactcaccactgatgagacgctaaccatgctgtaccg
tgtcaaaaaaggtgtttgtgaccagagctttggaatccatgtagcagagctggctaactt
ccccaagcacgtcattgaaaatgcaaaagagaaagcgttggagctggaggaattccagaa
catcagcaggtcagaagacccggacgaggaaccagcagccaaaaaatgttttctggaaaa
agaggagggcgaaagaataattcatgagtttctatcaaaggtcaagtctctgcccatttc
agaaatgtctgaagatgatgttaaaaaggaaatgaagatattgaaagcaggcgttttagc
tcgaaacaatagtttcatcaacaatattatctcccgaattaagatgtctacatga
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