KEGG   Latimeria chalumnae (coelacanth): 102360260
Entry
102360260         CDS       T02913                                 
Name
(RefSeq) HBS1-like protein
  KO
K14416  elongation factor 1 alpha-like protein
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102360260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcm03019]
    102360260
Messenger RNA biogenesis [BR:lcm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     102360260
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 HBS1_N GTP_EFTU_D2 MMR_HSR1 AAA_22 DO-GTPase2 AAA_29 UBA_RAD5A
Other DBs
NCBI-GeneID: 102360260
NCBI-ProteinID: XP_014352048
Ensembl: ENSLACG00000004528
LinkDB
Position
Un
AA seq 691 aa
MSRHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPATAAQFIYSRREKQSAFAEPLQEEYG
YEEEVEEEQLQHPAHSTGKNNQFSELEQGHLYSCLDQMRQVLGDSVPEQVMVEAAHTCKF
DPQKALDSVLTQETKQATKARSQDSVSVGKTTKGKTKDHPGTRLESEVVPKMTVSGKKQT
MGFDVPNSKNVEENGHIGGILRKAANADENPAPAVIEMSSRAAVAPSISLPAEEPVGLPT
PIKSSGKAKQQIDVKAELEKRQGGKQLLNLVIIGHVDAGKSTLMGHLLYLLGNVNKRTMH
KYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETKTKVITLMDAPGHKDFIP
NMITGAAQADVAVLVVDASRGEFEAGFESGGQTREHGLLVRSLGVTQLAVAINKMDQVNW
QQERFQEITSKLGQFLKQAGFKDSDVAYIPTSGLAGENMITRSKVPELTAWYKGPCLLEQ
IDSFKSPQRPVEKRFRLCVSDVFKDQGSGFCVTGKVEAGYVQTGERILAMPPNETCTVKG
ITLHDEAVDWAAAGDHVILTVTGMDIIKINVGCVFCDPREPIKACTRFRARVLIFNIEVP
VTQGFPVLLHYQTVSEPATIRRLVSVLHKSTGEVLKKKPKCLTKGQNAVIEIQTQRPVAL
ELYKHFKELGRFMLRYAGSTIAAGVVTEIKE
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgtctcgacatagaaatgttcgcggctacaattacgacgaagactttgaagatgacgac
ctctatggccagtctgttgaagatgattactgcatttcacctgcaacagctgctcagttt
atttactcaagacgtgagaagcagtctgcatttgcagagcccttacaagaagaatatgga
tatgaagaggaggtggaagaggagcaactacaacatcctgctcattcgactggcaagaat
aaccagttcagtgaacttgagcaaggacacctttactcgtgtcttgatcaaatgagacaa
gtactgggagattctgtaccggagcaagtgatggtagaagcagcgcacacctgtaaattt
gatccacagaaggccttggactctgtgcttacacaagagaccaagcaagctacaaaggca
aggagtcaggatagtgtgtcagtgggaaaaactacgaaaggaaaaacaaaggatcatcca
ggaactagactcgagtctgaggtggtgccaaaaatgacagtatcaggaaaaaaacagact
atgggttttgatgtcccaaatagtaaaaatgtggaagaaaatggtcacattgggggaata
cttcggaaagcagcaaatgcagatgaaaaccctgctccggcggtcatagaaatgtcctca
agagctgctgtggcaccctcgatctcccttcctgctgaagaaccagtgggattgccgact
cctattaaaagctcagggaaggcaaagcagcagattgatgtgaaagctgaactagagaag
aggcaagggggaaagcaactacttaacctagtaataatcggtcatgtcgacgctggtaaa
agtactttgatgggacacctgctttaccttttgggaaatgttaacaaaaggactatgcac
aagtatgagcaggaatctaaaaaggctgggaaggcttcatttgcctatgcatgggttttg
gatgagactggagaagaaagagaaaggggagtaaccatggatgtgggaatgacaaagttt
gagacaaagaccaaggttattacattgatggatgcaccaggccataaagattttattcca
aacatgatcacaggagctgctcaggcagatgtggcagtccttgttgtggatgcaagccga
ggagaatttgaggcgggctttgaatctgggggacagacaagagaacatgggttgttggtt
cgctcacttggggtaacacaactagctgttgccatcaacaagatggatcaggtgaactgg
caacaggaaagatttcaagaaatcaccagcaaacttggacagtttttgaagcaggctggc
tttaaggattctgatgtagcatacatcccgacaagtgggctggctggtgagaatatgatc
acaaggagtaaagtaccagagctgactgcatggtacaaagggccgtgtttgctagaacaa
attgattctttcaaatctcctcaaagaccagtagaaaaacgttttagactgtgtgtgtca
gatgtttttaaagatcaaggatcaggattctgtgttactggcaaagtagaagctggttat
gttcagactggggagaggatattggcgatgcctccaaacgaaacctgcacagtaaaagga
atcacattacacgatgaagcagttgattgggcagcagcaggggatcacgttattctcact
gtgactggcatggatatcatcaaaatcaatgttggctgtgtattttgtgatcccagggaa
cccattaaagcctgcactcgtttccgagctcgagtcctcatattcaacattgaggtccct
gtcactcagggttttcctgtgcttttacactatcaaactgtaagtgagcctgccactatt
agaagattagtgagtgttcttcacaagagtactggagaagttcttaagaagaagccaaag
tgcttgacaaaagggcagaatgcagtaatagaaatacagactcagcggcctgttgccctc
gaactctacaagcactttaaggaactaggccgatttatgttgcgttatgctggatccacc
atagctgctggagttgtcacagagatcaaagaataa

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