Latimeria chalumnae (coelacanth): 102361108
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Entry
102361108 CDS
T02913
Symbol
TAF1C
Name
(RefSeq) TATA-box binding protein associated factor, RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
lcm
Latimeria chalumnae (coelacanth)
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcm03021
]
102361108 (TAF1C)
Transcription machinery [BR:
lcm03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
102361108 (TAF1C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
102361108
NCBI-ProteinID:
XP_006002711
LinkDB
All DBs
Position
Un
AA seq
1152 aa
AA seq
DB search
MANGFPSLLFPSYYSTGPPNGRASCNTGVSGWGEYGQVRWDSSDCQQGEFVPLHCAKGEN
WEPVEGIPIPLLPPNAACRVPNVSIQELTFHGSVKRLPESNSNFSGIVNFTQQLGNFFLD
HSKIAFGSMGRLLEENFYMGNSKVTGKKRETTIGIRSISTFLQRVQYQDCPMSCSTFTAR
QLSTLLGDLIYDIPPALLAENLCLEMKGQRNKLLFDEAATGGALQYIPVTDMDRTHEGWL
LHPSGEAMNFLNFRKVVLHMEANRTPQLNAKQKAEEFELNGRILQISTSSVEEEVFVGVR
SDYHCGVWRLSKAANPTPLQVVQTTQPATCINVSPHMAGELLVCSESGAVYLWSVETGLQ
RIHQEMDNLYFNAQSAWRWSDFTAHPRVITYADRTGLNLMDVRTPGVCSQTLFKIGEAAG
CQKGERVILPKYLSDVHSYHHLITTQYSTYVLDERFPTVTMLKWNHMLQSPPMFAHVTPG
ASWDRANKVLLGSQRDQEVLLLQYKGGRQLPCQSLGPPRKLASPPDTLGYLQVQVPHRQE
VVRERLHSPGAGLTAFSTCHGTEFLCVFQLSQAGDIFYQMLVNKDAEKEDESITETAGPR
TEGPDVPAETVVTDEQQVSQFIIQGTVYTSDSNMEEEENAPFQEELVVNLVEGSNGEKDP
AVTDQPGGRFSPVPPRDPAEGDGTPSKVQEAIGSCLQSARRTGVSNIALARYKVWQKKVR
WAYEVKMQHPVLSTTLMLSTKDFHERFRGDPALYLQAREAMRTAMRERKVLSSDMFPSLG
SVPVPDPVDPAAWPDQLSKRLTASWDGRWSDWWEEMLGMNVESKVEALRQKRKRQKQAQS
RRRRGLSGSFTSSISFQSDLSDFSNVSGWSSLEKGSTSACSMEELSTSCTSASVTGSILK
RPDRESSRFNLELQEGRVTEPVRSAAASSWDSVHKEADIGQAGSTVSLQPFEDDSRIQAR
KSMLDSLHSQHTPRKQNHALPTRAVSANLSGLSSEPPQVFVGKSSHISAQGVHQTLDHPG
EDFSAALTSLQVTPQSQVSELLLPSSQSLHSQDMPDSSSFHSLDRLRPRISQNGKKTLGV
DYLAALCDPQLDRPYQEEAEIHAGSWAQFSSQESFIPSSQSSSRNIPRTPVSSSQREPSA
SQPRKKKPRMGF
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggctaacggattccctagtctgctgttcccgagttattacagcacaggccctcctaat
ggaagggccagttgtaatactggcgtctctggatggggagaatacggacaggtccggtgg
gatagttctgactgccaacagggggagtttgtaccgcttcactgtgctaaaggggaaaac
tgggagcctgtggaagggataccaatcccgctattaccaccaaatgcagcctgcagggtt
cctaatgtgagtattcaggagctgacgtttcatgggagtgtgaagagactgccggagagc
aacagtaattttagcggaatagtaaacttcacccagcagctggggaacttctttctggat
cacagcaagattgcatttggctccatggggagactcctggaggagaatttttacatggga
aacagcaaagtcacggggaaaaagagagagacaacaataggcatccgatccatttctacc
ttcctgcagagagtgcaataccaagattgtccgatgtcttgctcgaccttcactgcacga
caactgagtacgctgcttggcgatctgatatatgacatccctcccgctctactggcagag
aacctgtgtctggagatgaaaggccagcggaacaaactgctgtttgatgaggctgccaca
gggggcgctctgcagtacattcctgtcacagacatggaccggacacatgagggctggcta
ctccaccccagtggagaggccatgaactttcttaatttccggaaggttgtgctgcatatg
gaagcaaatcgaactccacagctgaatgccaaacagaaagcagaagaatttgaattgaat
ggtcggattcttcagatcagcacaagctcggtggaggaggaggtttttgttggagtgcgt
tcagattaccattgtggtgtgtggaggctctcgaaggccgcaaaccccacccctctgcag
gtggtacaaaccacccaacctgctacctgtattaatgtcagtccccacatggcaggagag
ctgcttgtgtgcagtgagagcggagcagtgtacctctggagcgtggagactggcctccag
aggatccatcaggaaatggacaatttgtacttcaacgcccagtccgcatggaggtggagc
gatttcacagcacaccctcgagtcatcacctacgctgataggaccggtctcaatctaatg
gatgttaggaccccgggggtgtgcagtcagaccctgttcaagattggagaagcagctggt
tgtcagaaaggagagagagtgattctgccaaagtatctgagcgacgtccactcttatcac
catctcattaccacacagtattccacctatgtgttggatgagcgtttccccactgtgacc
atgctgaagtggaaccacatgctgcagtctccccccatgtttgcacatgtcactcctggt
gcatcgtgggacagagcgaacaaggtgctgctgggaagtcagcgggatcaggaggtgcta
ctgctgcagtataaaggaggaaggcagcttccttgtcagtcccttggccctcctcggaaa
ctcgccagcccgccggataccttgggttacctccaggtccaggttcctcacagacaagag
gtggttagagagagattacattccccgggagcaggcctgacagcgttctctacgtgccat
ggtacagagttcctctgtgttttccaactgtcccaagcaggtgacattttttaccagatg
ctggtgaacaaagatgcagagaaagaagacgaaagcatcactgagacagctggacccagg
acggaaggccctgatgttcctgctgagaccgtagtaactgatgagcagcaagtctcacag
ttcatcatacaggggacagtctacacttcagacagtaacatggaagaggaggagaacgca
cctttccaggaagagctggtggtgaacttggtagaagggtctaatggtgagaaggatcct
gctgtcacagatcagcccggaggtaggttctcccctgttcctcccagagaccctgctgaa
ggtgatggcactccctccaaagtgcaggaggcaattggcagctgtctgcagagtgctaga
aggactggggtgagcaacatagcgcttgcaaggtacaaagtgtggcagaagaaggtgcgt
tgggcttatgaggtcaagatgcagcatcctgttctcagcactacacttatgctttccacc
aaggatttccatgagcgctttcggggggacccggccttgtacctgcaggccagggaggcc
atgagaacagccatgagggaaaggaaagtgctgagcagtgatatgtttccctcacttggc
agtgtgcccgtaccagatcctgtggaccctgcagcctggccagaccagctgagcaagcgt
ctcacagcctcttgggatgggaggtggagtgactggtgggaggagatgctgggtatgaac
gtggagagcaaggtggaggcattgcggcagaagaggaagcggcagaagcaagcacagtcc
aggcggcggagaggcttgtcgggcagcttcacctcctccatcagctttcagtctgacctc
tctgatttcagcaatgtctctgggtggtcgagccttgagaaagggtccacctctgcctgc
agcatggaggagttatccacatcttgtacctcagccagtgtgacagggtcaatactgaag
agacctgatagggagtcttcaagatttaatctggaacttcaggaaggaagagttactgag
ccagtgaggtcagctgctgcatcttcctgggacagtgtccataaggaagctgatattggg
caggcagggtctactgtgtcattgcagccttttgaagatgattccaggatccaagccagg
aaatctatgttggattctttgcattcacaacatactcccagaaaacagaaccatgcatta
ccaaccagggctgtctcagctaacctctctggactttcctctgagccacctcaggtcttt
gtgggcaaatcttcacacatctcagcacagggagtgcaccaaactctggaccaccctggt
gaggatttctcagcagctctgaccagcttgcaggtaactccacagagccaggtatcggaa
ctgctgctgccctcctcccagagtttacactcccaggatatgccagactccagtagtttc
cactccctagatagactgagacccaggatctcccaaaatggaaagaaaactcttggtgtg
gattacctggctgcactctgtgacccccagctggacagaccataccaggaggaagcggag
atccatgcagggagctgggctcagttttcctcacaggagtccttcattccctcatcgcag
tcgagttccaggaacatcccacggacgccagtctcctcttctcagcgagaaccctccgca
tcccagcccaggaagaagaaacccagaatgggattttaa
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