Latimeria chalumnae (coelacanth): 102361351
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Entry
102361351 CDS
T02913
Symbol
SKIV2L2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102361351 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102361351 (SKIV2L2)
03041 Spliceosome [BR:
lcm03041
]
102361351 (SKIV2L2)
03009 Ribosome biogenesis [BR:
lcm03009
]
102361351 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
lcm03016
]
102361351 (SKIV2L2)
Enzymes [BR:
lcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102361351 (SKIV2L2)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102361351 (SKIV2L2)
Spliceosome [BR:
lcm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102361351 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
102361351 (SKIV2L2)
Ribosome biogenesis [BR:
lcm03009
]
Eukaryotic type
Pre-60S particles
Helicases
102361351 (SKIV2L2)
Transfer RNA biogenesis [BR:
lcm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102361351 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
INO80F
nSTAND3
AAA_22
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
102361351
NCBI-ProteinID:
XP_005998500
Ensembl:
ENSLACG00000009075
UniProt:
H3AKY2
LinkDB
All DBs
Position
Un
AA seq
1031 aa
AA seq
DB search
MADAFGDDLFSVFEEETAAAKKPRAAEKPSKPGKRSDAGGIQAENSNASGKFKRDLEVDV
PDDVFEKKLKLEAVSSEEINLADLMPQVKVQPVETVESCTHEVALPAHEDYKPLKPRVGK
AAKEYPFILDAFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVVF
DEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAVQVLRDAGEVSKGDQKGRKGGTKGS
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYACQMSKLDFNTDEEKKLVEEVFSNAIDCL
SDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINM
PARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQL
VKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKKLEEQ
YNEIEIPNEESVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGW
GVVVNFSKKSNVKPNSGELDPLYVVETLVHCSKESVKNAATEAAKPAMPGEKGEMQVVPV
MLHLIAVISSVRLYIPKDLRSLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGLK
KVIQKTEAFEHRMYSHPLHNDPNLEMVYKLCEKKAQIAADIKAAKRELKKARTVLQMDEL
KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATALLSC
FVFQENSSEMPKLTEKLGGPLRQMQECARRIAKVSAEAKLEVDEEMYLSSFRPNLMDVVY
TWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGINKIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgatctgttcagcgtgttcgaagaagaaacggccgcagcc
aagaaaccgagagcggcggagaaacccagcaaacccgggaaacgttcagatgctggtggg
atccaggctgaaaacagcaatgcctctggaaagttcaagagagacctggaagtggatgtt
cctgacgatgtgtttgagaaaaagctgaaactggaagccgtgtcttcagaagagatcaat
cttgcagacttgatgccccaggtgaaggttcagccagtcgagacggtagaaagctgtact
catgaggttgctctccctgcacatgaagattataaacctctgaagcctcgtgttggaaaa
gcagcaaaggaatatcctttcatcctcgatgcttttcagagagaggcaattctgtgtatc
gacaacaatcagtctgttttagtgtccgcgcacacgtccgctggcaaaacagtgtgtgcc
gagtatgccatagcgttggctttgagagaaaagcagcgagtcatattcactagtcccatc
aaggctttgagtaatcagaaatatcgtgagatgtatgaagagtttcaggacgtcggactt
atgactggagatgtcactatcaaccccacggcttcgtgccttgtcatgacaacagagatc
ttgagaagtatgctgtacagaggttcagaggtgatgcgggaagttgcctgggttgtcttt
gatgaaatccactacatgagagacgcagaacgaggtgtggtatgggaagaaaccattatt
ttgcttcctgacaatgttcactatgtgtttctttctgccactattccaaatgctcgccag
tttgctgaatggatttgccatctccacaaacagccatgccatgtgatatacacagactat
cgccccacacctctgcaacactatatttttccagcagggggcgacggactccatctggtg
gtggatgaaaatggagaattcagagaagacaacttcaatacagcagtacaggtgttgaga
gatgcaggtgaagtgtcgaagggagaccagaaaggacgcaaaggaggaacaaaaggttcg
tccaacgtgtttaagatcgtgaagatgatcatggaaaggaactttcagcctgtcattatc
tttagcttcagtaagaaggattgtgaagcatacgcctgtcagatgtctaaactggacttc
aatacagatgaagagaagaagttggttgaagaagttttcagtaatgcaattgactgcttg
tctgatgatgataagaagcttcctcaggttgagcatgtacttcccctcttaaagaggggg
attgggatccatcatggaggcttactccctatcttaaaggaaaccattgaaattctcttt
tccgaaggcttgttgaaggccttgtttgcgacggagacctttgctatgggcattaacatg
ccagcacgaactgtcctcttcaccagtgcacgcaagtttgatggaaaagatttccgttgg
atcacctctggagaatatattcagatgtctggccgtgctggaagacgagggatggatgaa
aggggaatagttattcttatggttgatgaaaaaatgagcccaacggttggaaagcaactt
gtaaagggttcagctgatcctctgaacagtgcttttcacttgacctataacatggtatta
aacctgctgcgtgtggaagagatcaacccagaatacatgcttgagaaatctttctatcag
tttcagcattatagagccatcccaggggtggttgagaaggtaaagaagctggaagaacag
tacaacgaaatagaaatccctaatgaggagagtgtggtcacctattataagattcgacag
cagctcgcaaaactgggaaaggagattgaggagtacatacacaagccaaagtactgctta
ccgttcctgcagccaggcaggctagtgaaggttaagaatgaggacgacgattttggttgg
ggcgtggtcgtgaacttttccaaaaaatcaaatgtgaagccaaacagtggagaattggac
cccttgtatgtagtggaaacactggtgcactgcagtaaagaaagtgtgaaaaatgccgct
actgaagctgccaagcctgcaatgccaggggagaaaggagagatgcaggttgttcctgtt
atgctgcaccttatcgcagttatcagcagcgtccgcttgtacattcccaaagacctgcga
tcgctggacaataggcagagtgtattaaagtcaatacaggaagttcaaaaaaggtttcct
gatggagtgcccttgttggatcccattgatgacatgggcattaaagacccagggctcaag
aaagtcattcagaagacagaagctttcgaacacagaatgtactctcatccgttgcacaat
gatcccaatttggaaatggtctacaaactttgtgagaaaaaagcacagattgctgcagat
attaaagcagccaagcgagaactgaagaaagctcgaactgtactgcaaatggatgagctg
aagtgccgcaagcgggtgctcaggagattgggctttgccacatcatctgatgtcatagag
atgaaaggacgagttgcttgtgaaatcagcagtgccgacgagttgcttcttacggagatg
atgttcaacgggctttttaacgacctgactgcagagcaagcgaccgctttactgagctgt
ttcgtgtttcaggagaattccagtgaaatgcccaaactcacagaaaaactaggtggacca
ctgcgtcagatgcaggagtgtgccaggagaatagcaaaagtctcagcagaagcaaagttg
gaagtcgatgaagaaatgtatctaagttcattccgtcctaacttaatggatgtggtctac
acttgggcaaatggtgctacatttgctcagatctgtaagatgacagacgtatttgagggt
agtataattcgctgtatgaggcggctggaggaacttctgcgacagatgtgtcaagcagca
aaagccataggaaacacagaattggaaaataaatttgcagaaggtatcaataaaatcaaa
agggatattgtgtttgctgcaagtctttacttgtaa
DBGET
integrated database retrieval system
