Latimeria chalumnae (coelacanth): 102362026
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Entry
102362026 CDS
T02913
Symbol
LSM7
Name
(RefSeq) LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03018
RNA degradation
lcm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102362026 (LSM7)
09123 Folding, sorting and degradation
03018 RNA degradation
102362026 (LSM7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102362026 (LSM7)
03041 Spliceosome [BR:
lcm03041
]
102362026 (LSM7)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102362026 (LSM7)
mRNA degradation factors
5'-3' decay
Lsm complex
102362026 (LSM7)
Spliceosome [BR:
lcm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102362026 (LSM7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
102362026
NCBI-ProteinID:
XP_005989911
Ensembl:
ENSLACG00000015700
LinkDB
All DBs
Position
Un
AA seq
103 aa
AA seq
DB search
MADKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDD
QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagagaagaaaaagaaggaaagcatcctagatctttctaagtacattgac
aagacgattcgggtgaagtttcaggggggcagagaagcaagtggaatcctgaaaggtttt
gatccgcttttgaacttggtgctggacggtacaattgaatacatgagagatccggatgat
cagtacaaactaacagaagacacgcgtcagctcggtctggtggtgtgcagaggcacctcc
gtcgtcctgatctgccctcaggacggcatggaggcgatacccaaccccttcatccagcag
caggacggataa
DBGET
integrated database retrieval system
