Latimeria chalumnae (coelacanth): 102363493
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Entry
102363493 CDS
T02913
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03020
RNA polymerase
lcm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102363493
09124 Replication and repair
03420 Nucleotide excision repair
102363493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcm03021
]
102363493
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102363493
Enzymes [BR:
lcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102363493
Transcription machinery [BR:
lcm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102363493
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102363493
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
102363493
NCBI-ProteinID:
XP_014345075
Ensembl:
ENSLACG00000012071
LinkDB
All DBs
Position
Un
AA seq
1921 aa
AA seq
DB search
MHLEFSSDLLSGSRPGKEAMISPEVHKLCLLRLVWRPHRDSKEKRMSVTEGGIKYPETTE
GGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVYHVGFLTKTMKVLR
CVCFFCSKLLVDSNNPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQ
PDGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLNPERVHEIFKRI
SDEECIILGMDPKFARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINN
QLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEG
RVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRR
GNNQYPGAKYIVRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMS
MMGHKVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP
QSNRPVMGIVQDTLTAVRKFTKRDVFMDRGEVMNLLMFLSTWDGKVPQPAILKPRPFWTG
KQIFSLIIPGHINCIRTHSTHPDDEDNGPYKHISPGDTKVVVENGELIMGILCKKSLGTS
AGSLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKK
AKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKS
MVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYL
AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATIRNSINQVVQ
LRYGEDGLAAESVEFQNMATLKPSHKAFEKKFRFDYTNERAMRRMLQEEAVKEILSNAHI
QNELEKEFEKMKEDREVLRMIFPTGDSKVVLPCNLMRMIWNAQKIFHINARTPTDLHPLK
VVEGVNELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSSEAFDWL
LGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELI
NISKRPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTE
DQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFN
DDNAEKLVLRIRIMNSDENKFQEEEEKLGSLGEXVFGGGVCVSLCLTFFPLPSLLCLQVY
MHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTV
DVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGSFDLLLDAEKCKYGMEIPTNIPGLGTI
GSSGMFFGSAPSPMGGMSPAMTPWNQGTTPAYGAWSPSVGSGMTPGAAGFSPSAASDASG
FSPGFSPAWSPTPGSPGSPGPASPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYS
PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT
SPKYSPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY
SPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEE
N
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgcacctagaattctcatcggacttgctttctggaagtagacctggaaaggaagccatg
atctcgcctgaagtgcacaaactttgtcttctccggctggtgtggaggccgcacagagat
tccaaggaaaaacgtatgtctgttacggaagggggcatcaagtaccccgagaccacagaa
ggaggacgccccaaactcggaggcctcatggaccctcgccaaggagtgattgagaggacg
gggcgatgccagacgtgcgcaggtaacatgacggagtgtcccggccactttgggcacatt
gagcttgccaagccggtttaccacgttggcttcctcaccaaaaccatgaaggttcttcgc
tgcgtttgcttcttctgttccaaactgctggtggattcgaacaatccgaagattaaggac
atcctcaccaagtcgaaggggcagccccggaaacgtctgacccatgtgtatgacctctgt
aaagggaagaacatctgtgaggggggagaggagatggacaacaagtttggggtagaacag
cctgatggggacgaagacttgacaaaagagaagggtcatggtggctgtggccgataccag
ccccgcatccggcgcagcggcctggagctgtacgccgagtggaaacacgtcaacgaggac
tcgcaagagaagaagatcctgctgaaccccgagagggtgcacgagatcttcaagcgcatc
tcggacgaggagtgcatcatcctcggcatggaccccaagttcgcccggcccgagtggatg
atcgtcacagtgctgcccgtccctccgctgtccgtgcgtcctgccgtcgtcatgcagggc
tccgccaggaaccaggacgacttgacgcacaagctcgccgacatcgtgaagatcaacaat
cagctgcgccggaatgagcagaacggagcggccgcccacgtcatcgcggaggacgtcaag
ctgttgcagttccatgtcgccacaatggtggataatgagttaccaggactccccagggcg
atgcaaaagtcaggtcggccgctgaagtccctcaaacagaggctgaaggggaaggaaggt
cgtgtccgtggtaacctgatggggaagcgtgtagacttttctgcgcggactgtcatcacc
ccagaccccaacctctccattgatcaggtcggcgtgccgagatccatcgctgccaacatg
accttcccggaaatcgttactcccttcaacatagacaggttacaggagttggtgcggagg
ggaaacaatcagtaccccggggcgaaatacatcgtgcgggacaacggcgaccggattgac
ctgcgattccatcccaaacccagcgacctccatcttcagatcggatacaaggtggagaga
cacatgtgtgacggagacattgtcatcttcaacagacagcctacgctgcacaaaatgtcc
atgatggggcacaaagtccgaatcctgccttggtccacgttcaggctaaacctcagtgtg
acgactccgtacaacgccgactttgacggcgacgagatgaaccttcacctccctcagtcg
ctcgagacgcgggcggagatccaggagctggccatggtacccaggatgatcgtcacccct
cagtccaaccgccctgtcatggggattgtgcaggacaccctcactgccgtccgaaagttc
acaaagagggacgtcttcatggaccggggtgaggtcatgaacctgctgatgttcctttcc
acctgggatggaaaggtgccgcaacctgccatcctgaagccccgccccttctggacgggg
aagcagatcttctccctcatcataccgggacacatcaactgtatccgaacccacagcacc
catcctgacgacgaggacaacgggccctataaacatatatcgcctggcgataccaaggtg
gtggtggagaacggagagctgatcatgggtatcctgtgtaagaagtctctgggtacgtcg
gcgggttctctcgtccatatatcctatctggagatgggccatgacgtcacccggcttttc
tacagtaacatccagactgtcatcaacaactggcttctgattgaaggtcacacaatcggt
attggggattccattgctgatgccaagacctaccaggacattcagaacaccatcaaaaag
gccaagcaggatgtgatagaggtcatcgagaaagcccacaacaatgagttggaacccacg
cccggtaacaccctgcgacagaccttcgagaaccaggtcaaccggatcttgaacgacgcc
agagacaagaccggctcgtctgcgcagaaatcgctgtccgagtacaacaacttcaagtcc
atggtggtgtccggggccaagggctccaagattaacatctcgcaggttattgctgtggtg
gggcaacagaacgtagaggggaaacgaatcccgttcggctttaaacaccgcacacttccg
cacttcatcaaagacgactacggtcccgagagcagaggcttcgtggagaactcttacctg
gccgggctgacccctacggagtttttcttccacgctatgggtggtagagaaggtctcatt
gacacggctgtcaagacagctgagactggttacatccagcgacgtttgatcaagtctatg
gagtcagtaatggtgaagtacgacgccaccattcggaactccatcaaccaggtggtccag
ctgcgctacggcgaggatggactggcggcggagagcgtggagttccagaacatggcgacc
ctaaaaccctctcacaaggcgtttgagaaaaagtttcggttcgactacacgaacgagcgg
gcgatgcgtcggatgctgcaggaggaggcagtgaaggagattctcagtaacgcccacatc
cagaacgagctggagaaggagtttgagaagatgaaggaggaccgggaggtgttgagaatg
atcttccccacgggagacagcaaggtggtgctgccctgcaatctcatgaggatgatctgg
aacgcgcagaaaatcttccacatcaatgcccgcacccctacggacctgcaccctctgaag
gttgtggaaggcgtcaacgagttgagcaagaagctggtgattgtgaacggagacgacccg
ctgagcaggcaggcgcaagaaaacgccacgctgctcttcaacatccacctgcgctccacg
ctgtgcagtcgtcgcatgacggaggagttccggctcagctcggaggcttttgattggctg
ctgggggagatagagtccaaattcaaccaagcgatagcccatccgggtgagatggtggga
gccctggctgctcagtccctgggtgaacctgccactcaaatgactctgaataccttccat
tacgctggtgtgtcggccaagaacgtcaccctgggagtccctcgtctgaaagaactgatc
aacatctccaagaggcccaaaactccttccctgacggtcttcctgctgggccaatccgct
cgtgatgcggaacgcgccaaggatatcttgtgtcgcctggagcacacgacgctgcgcaaa
gtcaccgccaacacggccatctactacgaccccaacccccagaacacggtggtgacggag
gaccaggagtgggtgaacgtttactatgagatgccggacttcgacgtgacgcggatctcc
ccctggctgctgcgtatcgagctggaccgtaagcacatgacggaccgcaagctcaccatg
gagcagattgcggagaaaatcaatgcaggtttcggagacgacctgaactgcatcttcaac
gacgacaatgcggagaagctggtgctacggattcgcataatgaacagtgatgagaacaag
ttccaggaggaggaggaaaaactcggttcgctgggagaataggtttttgggggtggggtg
tgtgtgtccttgtgtctgactttttttcccctcccttcgctgctctgcctgcaggtgtac
atgcacctgccccagacggacaacaagaaaaagatcatcatcacggaggacggggagttc
aaggccctgcaggagtggatcctagagacggacggggtcagcctgatgagagtgctgagc
gagaaggacgtagaccctgtccgcaccacctcgaacgacattgtggagattttcacggtg
gacgtgttgatggaagccgcagcgcacggggagtcggatccaatgaagggagtttccgag
aacatcatgctgggccagctggcgccggccggaacgggcagcttcgacttgctgctggac
gcggagaagtgcaaatacggcatggagatccccaccaacattccaggactgggaaccatt
ggctcttctgggatgttctttggctctgcacccagccccatgggcggcatgtcccctgca
atgacgccatggaatcagggaacgactcctgcgtatggagcgtggtcgcccagcgttggt
agcggaatgacccccggcgctgccggcttctcccccagcgccgcttcagacgccagtggt
ttcagtccgggattctccccagcttggtcgcccacccctggctcccccggctcccccggg
ccggccagtccttatatcccctcacctggaggtgccatgtcaccaagctactctccaacc
tcccctgcatatgagccaagatcgcccggaggatacaccccgcagagcccaagctattct
cccacctcaccctcctacagccccacctcgccctcctattcgcccactagccctaactac
agccccaccagccccagctacagcccgacctctcccagttactcgcctaccagtccgagt
tatagcccgacctctcccagttacagcccgacgagccccagttattcccccacctcgccc
tcttactctccaaccagccccagctacagcccgacatcgcctagttatagcccaaccagt
cctagctactcgcccacctcgcccagctacagcccaacaagcccctcctacagcccaacg
tcacccagctattccccaaccagcccctcctacagcccgacctccccaagttactccccc
acctctccttcgtactccccgaccagccccaactattctccaacctcgcccaactacacc
ccgacttctcccagctacagcccgacgtcacccagttactctccgacttcgcccaactac
actccgacttcgcccaactacagcccgacgtcacccagttactcccccacttctcccagt
tacagccccacctctccgagctactctccctccagtcccaggtacacgccccagtcgccc
acttacaccccaagctcgcccagttatagcccgagcagtccaagttactcccccaccagc
cccaaatataccccaaccagtccttcctacagccccagttccccggaatataccccaacc
tctcccaaatacagcccaacgagccccaagtactcgccaacctctcccaagtactccccc
acatcaccgaagtattccccaacatcacctacatactctcccaccacccccaaatactcc
ccgacaagcccgacttactccccgacatctccggtgtacacaccgacttcacccaaatac
tcccccacttcccccacctattcgccaacttcgcccaagtactcgcccacctccccgacc
tactcgcccaccagccccaaaggttcaacctactcgcccacctcgcctggctacagcccc
acctcccccacctacagcctcaccagccctgccatcagcccggacgacagcgacgaagag
aactga
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integrated database retrieval system
