Latimeria chalumnae (coelacanth): 102364283
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Entry
102364283 CDS
T02913
Symbol
BARD1
Name
(RefSeq) BRCA1 associated RING domain 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102364283 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102364283 (BARD1)
04121 Ubiquitin system [BR:
lcm04121
]
102364283 (BARD1)
03036 Chromosome and associated proteins [BR:
lcm03036
]
102364283 (BARD1)
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102364283 (BARD1)
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102364283 (BARD1)
Ubiquitin system [BR:
lcm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
102364283 (BARD1)
Chromosome and associated proteins [BR:
lcm03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102364283 (BARD1)
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102364283 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_4
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
zf-RING_10
RTT107_BRCT_5
NIBRIN_BRCT_II
ANK_LRRK2
zf-C3HC4
Ank_KRIT1
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
102364283
NCBI-ProteinID:
XP_005997741
Ensembl:
ENSLACG00000014837
LinkDB
All DBs
Position
Un
AA seq
884 aa
AA seq
DB search
MLRVRPVNQPGLGGGAAGKGILASHCDPEPRAGEKSPAPRREVEPRAGEGSSASVSCSSM
ESLPGWTRTRAALQQLETGLSCSKCAHILQEPLCLGGCEHIFCRSCVGERLGIRCPVCDI
PAWAKDVQINRQLNNIIHLFNSLQSLVNTQEKPSAVDEGVPLKNSPEKPKAKPKMKMWFS
PRSRTMRCALGKKTPQEGQQQEKQTADFDSVERMSASVYEFFPSPPKLRSPKKKSRPKPK
QPKKKPLVCINQEWGFGKKNAKKNKKEEEKESSEEPHTERVVSFCSQPEVFCSLEPSELE
EATPALVEPEPVVHFVLGEDGMGSRSELVGTLTPLEESPENETPPTLLGVNQENQVEDSQ
SSICEKPCRTLKSKKGAKRLRQLPSFPSALSLKRTRKEEPGLDLLSTSRKVSDRKASSSP
VSKPSPQPNPESLTSCSENETVAQTSPAAVIANGTPSKKGGSGGQNAKRSPSAQKSPRTP
FSSPKSKMRADKMESPTGTQLSPGNPQHLKRNHKGETPLHIASIKGDVAAVEDLLKNGVD
PNIKDNAGWTPLHEACNHGHVQIVELLLKHKALVNTTGYQNDSPLHDAIKNGHVDIVRLL
LLHGASQEAVFCRGGGAAAEGKRVEGRWNIFGLRPIDYAETDGMKSVLQLSSAGCKSFST
QQPLAVGSSQRREGPVVLLGSGLSSSQRNELNKVVGLLKARKCTDFSSSVTHIVAPDDNI
LSTMKCMLGTLSGCWVLKFQWVTACLQKKARANEEDYELSPGARRGRFNRDQLLPQLFDG
CYFYFLGSFKKHRKDDLIQLVRAGGGQVLARQPKPDSDVTQTVNTVAYHAEAGSDQCFCT
QYILYEKSSGYRPKKTRVGKVWTAPSCWLIDCVTSFQLLPVCEL
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgctgagggttcgcccggtgaaccagccggggctcggaggaggagccgccgggaagggg
atcctggcctcccactgtgacccggagccacgggccggggaaaagagccccgcgccccgc
cgagaggttgagccgcgggccggggaagggagctctgcgtccgtgtcctgcagtagcatg
gagtccctccccggttggactcgcactagagccgctctgcagcagctggagaccggattg
agctgctccaagtgtgctcatatcttgcaggagccactgtgcctgggaggctgtgaacac
atattttgtaggagctgtgtgggtgagcgtcttggcatcaggtgcccagtttgtgacata
ccagcctgggcgaaagatgtgcagataaaccgacagttaaacaacattatacatctgttc
aacagtcttcagagtcttgtaaacacccaggaaaagccgtccgctgtggatgaaggtgtt
ccattgaagaacagtcccgaaaagcccaaagctaaaccgaagatgaagatgtggttcagc
cctcgaagcagaacgatgaggtgtgccctggggaaaaaaacacctcaagaagggcagcag
caggagaagcagacagcagacttcgattctgtagagagaatgtcggcttcggtttatgag
ttctttccatcgccacccaaactgcgatcccccaaaaagaaatccaggcctaagcctaag
cagcccaagaagaagccgctcgtgtgcattaaccaggagtggggctttggaaagaagaat
gctaaaaaaaacaaaaaggaagaagaaaaggaaagttctgaggagccccacacagaaagg
gttgtgtcattctgtagccagcctgaagtgttctgtagcctggagccaagtgagcttgag
gaggctacgccagcacttgtagagcctgagcctgtcgtgcactttgttcttggtgaggat
ggcatgggttcccgctcagagcttgtgggcacactgacccctctggaggagagtcctgag
aatgagacaccacctacgctgttgggcgtgaatcaagaaaaccaggttgaggactctcag
tcatccatttgtgagaagccctgtagaactttgaagagcaagaagggagcaaaacgtttg
aggcagctgcctagcttccccagtgccctttctctgaagaggactaggaaagaagagcca
ggtttggacctgctttctacctctcgaaaggtcagtgacaggaaagcatcaagcagccct
gtctcaaagccaagcccacagcccaaccccgagagcctcaccagctgctctgaaaatgag
actgtggcccagacttcacctgcagctgtaatcgctaatggtactcccagtaaaaagggg
ggcagtgggggtcaaaatgcaaaaagaagcccatctgctcagaagtctcctcgcactcca
ttttcttcaccaaaaagcaaaatgcgtgcagacaagatggaatcccctactgggacacag
ctgtctcctggtaacccacaacacctaaagaggaatcacaaaggagaaacgccactccac
attgcttccataaagggcgacgttgcagctgttgaagatctactgaagaatggagtggat
ccaaacattaaggataatgctggctggacaccactgcatgaggcttgcaatcatgggcat
gtgcagatagtagagctgctgctgaagcacaaagcgctggtgaacaccaccgggtaccag
aatgactcccccctgcacgacgccatcaagaacggacacgtggacatcgtccggctttta
ctgctgcatggcgcttcccaggaagcagtcttctgtcggggtgggggagcagcagcagaa
gggaagagagttgagggcagatggaacattttcggcctgcggccaatagactatgcagaa
actgatgggatgaaatctgtgctgcagctttcgtcggcaggatgcaaatcattttccacg
cagcagcctcttgcagtgggaagtagccaacgccgggaaggccctgtggttctgctgggt
agcgggctgtcttcatcccagcggaacgaactcaacaaagtggtgggacttctgaaggcc
agaaaatgcactgacttcagtagttcggtgactcatatcgttgccccagatgacaacatt
cttagcaccatgaagtgcatgctgggaactctgagcggctgctgggtcctgaaattccaa
tgggtaacagcttgtctgcagaagaaagccagggcaaatgaggaagactatgaactatct
cccggcgcccgacgtggccggttcaacagggaccagctgctgccgcagctgtttgatggc
tgttacttctacttcctgggctccttcaagaagcatcgaaaagacgaccttatacagctg
gtcagagctggaggcgggcaggttctcgctcgacagcccaaaccagacagcgatgtgacg
cagaccgtgaatacggtggcctaccacgcggaggcaggctctgaccagtgcttctgcacc
cagtacatcctctacgagaagtcgtcgggctaccggcccaagaaaacgcgggtaggcaaa
gtctggactgccccctcctgctggctcatcgactgcgtgacgtccttccagctgcttcca
gtctgcgagttgtaa
DBGET
integrated database retrieval system
