Latimeria chalumnae (coelacanth): 102364453
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Entry
102364453 CDS
T02913
Symbol
PRPF4
Name
(RefSeq) pre-mRNA processing factor 4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102364453 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcm03041
]
102364453 (PRPF4)
Spliceosome [BR:
lcm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
102364453 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_RFWD3
WD40_like
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
102364453
NCBI-ProteinID:
XP_005994525
LinkDB
All DBs
Position
Un
AA seq
510 aa
AA seq
DB search
MSDDEDIPIVKKARIYYGSLEEKERERLTRGESGLMGKDGVKAGIEAGHINISSGEGFEI
EDHISERQAEVLAEFERRKRARQINVSTDDAEVKACLRALGEPITLFGEGPAERRERLRN
VLSVVGTDALKKTKKEEEKAKKSQEEYQQTWYHEGPVSLKTARLWIAHYSLPRAAKRLEE
ARHYKEIPEASRTAQVQELYKTLRCVSAFCVQFGDDKPRSYPTNQPNSRLVISLFWCSRS
GLCKLWSIPDCTLIRTLRGHSTHVGAITFHPQATISLDEKDVNMASCAADGSVKLWSLDS
DEPVADIEGHTVRVARVAWHPSGRFLGTTCFDHSWRLWDLEAQEEILHQEGHSKGVYDIT
FHPDGSLAGTGGLDAFARVWDLRTGRCIMFLEGHLKEIYGLSFSPNGYHIATGSGDNTCK
IWDLRQRRCSYTIPAHQNLVSGVKFQPSVGHFLLTGAYDNTAKIWTHPGWSPLKTLAGHE
GKVMGLDISQDGQLIVTCSYDRTFKLWMAE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgatgaagatataccaatagtgaaaaaggctcgtatttactatggcagcctg
gaagaaaaagagagagagcgtctgaccagaggggagtcgggattgatgggaaaagatggt
gtgaaagctgggatagaggcaggacatattaacatttctagtggagaaggtttcgaaatt
gaggatcatataagtgagcgtcaggcggaagtacttgcagagtttgagcgcaggaagcga
gcgagacaaattaatgtctctacagatgatgctgaggttaaagcatgcttaagagcactt
ggagagccaatcaccctgtttggtgagggaccagccgagagaagagaaagattaaggaat
gttttgtctgtggttggtacagatgccttgaaaaaaaccaaaaaggaggaggagaaagca
aagaagagtcaagaagagtatcagcaaacgtggtatcatgagggaccggtgagcttgaaa
acagcccgactctggattgcacattactccctacccagagcagcaaaacgtttggaagaa
gcccggcattacaaagagattcctgaggcatcacggacagcacaggttcaggaattgtac
aagactctcagatgtgtgtcagctttttgtgtccagtttggggatgataaaccgaggtcc
tacccaaccaaccaacccaatagcaggttggttatttctttattttggtgttctaggagt
ggactgtgcaagctctggtctattcctgactgtactctaattcggacattaagaggtcac
agcacgcacgtgggagcaatcacgtttcatcctcaagcgacaatctcactggatgagaag
gatgtgaacatggcgtcctgtgcagcagatggctctgtcaaactctggagtcttgacagc
gatgagccagtagctgatattgaagggcacacagtgagagttgctcgtgtagcttggcat
ccttcaggcagattcttgggcaccacatgttttgatcactcgtggaggctgtgggacctt
gaggcccaggaggagattctgcaccaggaaggacacagcaagggggtgtatgacatcacc
tttcaccccgatgggtcacttgctgggacaggaggtctagatgcatttgccagagtgtgg
gatttacggacagggcgttgcatcatgttcttggagggacacctgaaggagatttatgga
ctcagcttctctcctaatggatatcatattgcaacaggaagtggggataatacctgtaaa
atctgggaccttcgacagagaagatgcagctacactatcccagcccaccagaatttggtg
tctggagtcaagtttcaacccagtgttggtcacttccttcttaccggtgcatacgataac
acagcaaagatttggacgcacccaggctggtcaccgctgaaaacactggctggacatgag
ggcaaagtgatgggactggacatctcccaagatggacagctgattgtaacatgttcttac
gataggacgttcaagctctggatggcagaataa
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