Latimeria chalumnae (coelacanth): 102364819
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Entry
102364819 CDS
T02913
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102364819 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcm03041
]
102364819 (PRPF40A)
Spliceosome [BR:
lcm03041
]
Complex A
U1 snRNP components
U1 related factors
102364819 (PRPF40A)
Complex B
102364819 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
102364819
NCBI-ProteinID:
XP_006002134
Ensembl:
ENSLACG00000006676
LinkDB
All DBs
Position
Un
AA seq
903 aa
AA seq
DB search
MASTDGTNGPGQPVPFQNGPPLMPPPFMGPPGMPPHFPHMGMPSMGQRPPMPPIPPGMMP
PMLPSMGGPPMGQMPGMIPPMMPGMMMPHIPPGPIQPTVLPGVNKPDVPVGSAVPPNQTT
NPAIVSVQQASIACSSPKEEPTKKKSLWTEHKSPDGRIYYYNIETKQSTWEKPDELKTPA
EQMLSKCPWKEYKSDTGKSYYYNSQTKESRWTKPKELEDLEGTMIRAEEDGKQEENLASL
NSTPSSMTETPAATTTIENSAQASPAIVATETTEEQKEEKEEEEQQQQQEEVAVKDVEEP
AETTPEPEEETSKQEAIEKEIPKKEEEKTEPVRKTYTWNTKEEAKQAFKELLKEKRVPSN
VSWEQAMKMIINDPRYSALSKLSEKKQAFNAYKVQTEKEEKEEARLKYKEAKEAFQRFLE
NHEKMTSTTRYKKAEQMFRELEVWNAISERDRLEIYEDVLFFVARKEKEQAKQLRKRNWE
ALKNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEE
DEEKQKTLMRERRRQRKNREAFQTFLDELHDHGQLHSMSSWMELYPTISADIRFTNMLGQ
PGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKNFVVEVKTAFDEFGSVISLDKRATTL
DAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESVFKSMLKQAAPPIEPGAVWEEIRE
RFVKEPAFEDITLESERKRIFKDFLHVLENECQHHHSKTKKHSKKSKKHHRKRSRSRSGS
ESEEEESHSKRKKRSSSKSDSERSSSLESERSYKKSKRHKKKSKKRRHRSMSPDSEGERE
KERREKEKVSEKDRNKPKSESTKSPRKKTGKDSGNWDSSGSELSEGELEKRRRTLLKQLD
DDQ
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacagatggtacaaatggaccaggccagcctgtaccttttcagaatgggccg
cccttgatgccaccaccatttatgggaccaccaggtatgccacctcattttccacacatg
ggaatgccatcgatgggccagagaccaccaatgccacctattcctccaggaatgatgcca
ccaatgttgccttcaatgggtggacctccaatgggacagatgcctggaatgattccacca
atgatgccaggaatgatgatgccacacattccacctggtcccatacaaccaacagtattg
ccaggagtcaacaagcctgatgtaccagtaggttcagcagtgccaccaaaccagacaaca
aatcctgccattgtttctgttcagcaagcttccatagcttgcagctccccaaaggaagag
ccaactaagaaaaaatctctttggactgagcacaaatcaccagatggaaggatctattac
tacaatattgaaacaaaacagtcaacctgggagaagccagacgaactgaaaacacctgct
gagcaaatgttgtcgaaatgtccttggaaagaatacaagtcagacactggaaaatcctac
tattataactctcagacaaaggaatcacgctggacaaaacccaaagaattagaagatctt
gaaggtactatgatcagagctgaagaagatggaaaacaagaagaaaatttagcaagtctt
aactctaccccatcatcgatgacggaaactcccgctgctacaactactatagaaaattct
gcccaagccagcccagccattgttgctactgaaaccactgaagaacaaaaagaggagaag
gaggaggaggagcagcagcagcagcaagaagaggttgctgtgaaagatgtcgaggaacct
gcagagacgactcctgaacctgaagaggaaacttccaaacaagaagccatagaaaaagag
attccaaaaaaggaagaagaaaagactgagccagttaggaaaacatacacatggaatacc
aaagaggaggcaaagcaagcatttaaagagctgttaaaagaaaagcgtgtgccatcaaat
gtctcttgggagcaagctatgaaaatgataattaatgaccccagatacagtgcattatct
aaactgagcgaaaagaagcaagcctttaatgcttacaaagtacaaacggagaaggaagaa
aaagaggaagcaaggttgaaatacaaggaggctaaggaagcattccagcgtttccttgaa
aaccatgagaaaatgacatccacaactaggtacaaaaaagctgagcagatgtttcgagag
ctggaggtgtggaatgcaatatcagaacgtgaccgacttgaaatatatgaagatgtctta
ttcttcgttgctagaaaagaaaaggaacaagcaaaacagctacgaaagaggaattgggag
gcccttaagaacatcttggacaacatggctaatgtaacgtactgtaccacatggtctgaa
gcacagcagtatctaatggataatcccacatttgcagaggatgaagagctacagaatatg
gataaagaggatgctttgatttgctttgaagaacatatcagagctttagagaaagaagaa
gatgaagaaaaacagaaaaccttaatgagggaaagacgacgacaacggaaaaacagagaa
gcttttcagacatttctggatgaattacatgatcatggacagctacattctatgtcttct
tggatggaactgtacccaaccattagtgcagacataagatttactaatatgcttgggcaa
cctggatcaacagcccttgaccttttcaagttttatgttgaagacttgaaagcacgatat
catgatgagaagaagataatcaaagatatccttaaggataaaaattttgtggttgaagta
aagactgcatttgatgaatttggctcagtaatcagcctagacaagagagctacaacatta
gatgcaggaaacatcaaacttgctttcaacagcttgttggagaaagcagaagccagagag
cgagaaagggaaaaggaggaagccaggaaaatgaagcgaaaagagtctgttttcaagagt
atgctgaagcaagctgcacccccaattgagcctggtgcagtctgggaggaaatcagggag
aggtttgttaaggaaccagcatttgaagatatcacacttgaatcagaaagaaaaagaata
ttcaaagattttttgcatgtacttgagaacgaatgccagcatcatcattcaaagactaag
aagcattctaaaaagtctaaaaagcaccacagaaagcgatctcgctcacgctcaggctca
gaatcggaagaggaagaatcccattcaaagaggaaaaagcggtcatcttcaaaatctgac
tcagagcgttcttccagcttagaatctgaacgaagttataagaagtccaaaagacacaaa
aagaaaagtaaaaaaaggagacaccgttctatgtcccctgattcagaaggagaacgtgaa
aaagaaagaagagaaaaggagaaagtcagtgaaaaggatagaaataagcctaaatcagaa
tcgactaaatcgcccagaaaaaagactggaaaagattcaggcaactgggattcctcagga
agtgaactcagtgaaggagaattggaaaaacggaggagaactcttctaaaacaactggat
gatgatcaatag
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