KEGG   Latimeria chalumnae (coelacanth): 102365405
Entry
102365405         CDS       T02913                                 
Symbol
POLR2E
Name
(RefSeq) RNA polymerase II subunit E
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
lcm  Latimeria chalumnae (coelacanth)
Pathway
lcm03020  RNA polymerase
lcm03420  Nucleotide excision repair
lcm04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:lcm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102365405 (POLR2E)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102365405 (POLR2E)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lcm03021]
    102365405 (POLR2E)
   03400 DNA repair and recombination proteins [BR:lcm03400]
    102365405 (POLR2E)
Transcription machinery [BR:lcm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     102365405 (POLR2E)
  RNA polymerase III system
   RNA polymerase III
     102365405 (POLR2E)
  RNA polymerase I system
   RNA polymerase I
     102365405 (POLR2E)
DNA repair and recombination proteins [BR:lcm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      102365405 (POLR2E)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1
Other DBs
NCBI-GeneID: 102365405
NCBI-ProteinID: XP_005996389
Ensembl: ENSLACG00000013686
UniProt: H3B0X8
LinkDB
Position
Un
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEDFKGQFGDKPSEGRPRRSDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggacgatgaggaagagacctatagactctggaaaattaggaaaaccattatgcagctt
tgtcatgatcgaggatacctggtgacacaagatgagttggatcagactctggaagatttt
aaaggacagtttggagacaagccgagtgaaggtcgaccacgtaggtctgacctcactgta
ctagtagctcataatgatgaccctacggaccagatgtttgtgttcttccctgaggaacct
aaggtaggaataaagacgatcaagatgtattgccaacgaatgcaggaagagaatatcacc
cgagctatcattgtagtacagcagggtatgactccttcagcaaaacagtcattggttgat
atggctcccaaatacattctggaacagtttctacaacaagagttgctcattaatatcaca
gaacatgagttggttccagagcatgttgtgatgacaaaggatgaagttacagagctactg
gcacgatataaactaaaagagagccagcttcctagaatacaggcgggagatcctgtagct
cgatattttggattgaaacgaggacaggtggtgaagattataaggcccagtgagacagcc
ggccgctacatcacttacaggctggtgcagtga

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