Latimeria chalumnae (coelacanth): 102367138
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Entry
102367138 CDS
T02913
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102367138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcm03019
]
102367138
03036 Chromosome and associated proteins [BR:
lcm03036
]
102367138
Enzymes [BR:
lcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102367138
Messenger RNA biogenesis [BR:
lcm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102367138
mRNA degradation factors
5'-3' decay
Decapping complex
102367138
Chromosome and associated proteins [BR:
lcm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102367138
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102367138
NCBI-ProteinID:
XP_005999191
Ensembl:
ENSLACG00000015214
LinkDB
All DBs
Position
Un
AA seq
487 aa
AA seq
DB search
MATARTENPLVVGLSKQNGQVRAQQKVASGPPGIGQLPQNQPFKTPTSGQSLPQKPATQQ
QGSGMTAIRFGDDWKKSLQLPPKDMRIRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEK
PSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAIVMVPTRELAL
QVSQISIQLGKRMGDLKVMATTGGTNLRDDIMRLDETVHVIIGTPGRLLDLVKKGVAKVD
RTQMIVMDEADKLLSQDFLVILEEIISFLPKNRQILLYSATFPISVQKFMSKYLQKPYEI
NLMDELTLKGITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLG
YSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETY
LHRIGRSGRFGHLGLAINLITSDDRFNLKGIEDQLCTEIKPIPSSIDKSLYVAEYHSQSP
EGEEEGQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagccaggacagaaaatccacttgtggtggggttaagcaaacaaaatgggcag
gtgagggcacaacaaaaagtggcctcaggcccccctgggattggacagctgccacagaac
cagccatttaaaactccaacatcaggtcagagcttaccacagaaaccagcaacgcaacag
caagggagcggcatgacagcaatcaggtttggggatgactggaagaaaagcctgcagctc
cctccaaaggacatgagaattaggacatctgacgttacagcaaccaaaggaaatgaattt
gaagactactgtttgaaaagagagctcttgatgggaatttttgaaatgggctgggagaaa
ccttctcctatccaggaggagagtattcccattgctctatcagggagggacatccttgcc
agagccaaaaatgggaccggcaagagcggtgcgtacctcatccccctgctggaacgtctg
gacttgaagaaagactgtattcaagccattgtgatggttcccacacgtgagctggccctc
caggttagtcagatctcgatccagttgggaaaacgcatgggagacctcaaggtgatggca
actacaggaggaaccaacctacgtgatgacatcatgaggcttgatgaaacagtgcatgtg
atcattgggacgccagggaggctgctggacctggtgaagaaaggagtagctaaagtggac
cgaacacagatgattgtgatggacgaggcagataagttgctgtctcaggactttctggta
attttggaggagatcatcagtttcctgcctaaaaaccgtcaaatcctgctgtattctgcc
actttccccatcagtgtacagaagttcatgtccaagtacctgcagaagccctatgagata
aacttgatggatgagttgacattgaaggggatcactcagttctatgcctatgtgacagaa
agacagaaagtacactgcctcaacactttgttttccaggctccaaattaaccagtcaatt
attttctgtaactcaacgcagagggtggagctactggccaaaaagatcactcagctgggc
tattcctgcttctatattcatgccaaaatgatgcaggaatacagaaatcgagtatttcac
gacttcagaaatgggctttgccgtaatctggtctgtactgatctcttcaccagaggtatt
gatatccaggctgttaatgttgtcataaattttgatttcccaaagaatgcagaaacgtat
ctacaccgtattggcagatcaggtcgttttggtcacctgggcttggcaataaacctgatc
acatctgacgatcgttttaacttgaagggtatcgaagaccaactgtgtacagagatcaag
cctattccaagtagtatcgacaagagtctgtatgtggcagagtaccatagccagtctccc
gagggagaagaggaggggcagtaa
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