Leuconostoc carnosum: C270_01575
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Entry
C270_01575 CDS
T02321
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcn
Leuconostoc carnosum
Pathway
lcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C270_01575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcn03400
]
C270_01575
Enzymes [BR:
lcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C270_01575
DNA repair and recombination proteins [BR:
lcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C270_01575
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
SusG_C
MFD_D3
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFT81234
UniProt:
K0D5V6
LinkDB
All DBs
Position
331505..335035
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLVNYLGQTDTIKNLNQQATAQSAQLLLGVNGTARAASIAAMFKVQPRQMLVITDTQAH
AEQLYSDLTSLVGDAVYHFPAEESVATEMAISSPELRRQRVQTLIALLANQPMLVVTNLT
GIEQLLPAPMTLREAQLKVHVGQNYNLNQIKNTLMMMGYTPVKLVQTPGEFAQRGSIMDI
YPLTLEDPIRLDFFDDELDQLKSFDVATQKSIQTLDEMAIEPATDFVVSEANYDRAKLAI
ETAFSQYRSQLQGVEKKHATDGFNLTQHVLNERQRGSELLPYAKHFFDGQITIFDYLNDD
ALIVLDEYTRITETSLQQLTRDQEWIDNQTTSYQLLPNQTWRADLNDLLGHNTRPTLYLA
NFQRGLNRVKFTNIVEVTTRPANQYYGQLSALKNDLDYAQNAGTTVILLINDAKRRRDFS
ASLADLTIPISETKNILPHQVQLTAGNLTAGFEWPQLHLTVLTEHELFAQARRSAPKTRK
IANAERLKSYNELNVGDYVVHINHGIGRYEGLQTIAVDGGKQDYLSIAYQKNAKIFIPVT
QLNLIQKYVGASDTAKAPKLNKLGGSEWAKTKRQVAAKIEDIADDLLALYAKREAQQGYA
FPPDDTNQLKFDTAFGYPETPDQIRSIEEIKVDMQKPRPMDRLLVGDVGFGKTEVALRAV
FKAANEGKQVAFLAPTTILVQQHYETILARFSDFPDIKIGVLSRFQTPSQNKAVIKQLNK
HEIDVVVGTHRLLSKDVDFSDLGLLIIDEEQRFGVKHKERLKQLRSSVDVLTLTATPIPR
TLNMAMVGARDLSIIETPPANRYPIQTYVMEADWTIVRDAIEKELARNGQVFYLHNRVAD
LDRVASQITDLVPSARVAAIHGQMSESQLESILYDFLNGDYDVLVTTTIIETGVDIPNAN
TLIVENADHMGLAQLYQLRGRVGRSARLAYAYFTYPFMRTPSEEAEKRLEAIRDFTELGS
GFRIAMRDLSIRGAGDILGKQQHGFIDSVGYDMYTKMLKEAVAEKQGNAPKDQLQETDAE
LILGVLAYLPDEYVSDNAQKIELYTRIRQAKTDDNFEEIESDMLDRYGEMPDEVARLLLV
GQIKQLADQAQVTNIRRQRNQVTIQFSDQATQQLSGEAIFETLVDVPLKAAVRTEAGDLQ
VILTVNDVAESSIWLNVLREFLVVVVNRDMPQDKNE
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagttaattatttaggtcagactgatacaattaaaaatttgaatcaacaggca
actgcgcaatcagcacagttgcttttaggcgtcaatggtacagctcgcgcagctagtatt
gcggctatgtttaaagtacagccacgtcaaatgttggttataactgatacacaggcacat
gctgagcaactgtacagtgatttgacctctttggtaggagatgcggtttatcattttccg
gcggaagaatccgtagccactgaaatggctattagttcaccagaattaaggcggcaacgt
gtacaaacattaattgctttattagctaatcagccaatgctggttgtgactaatttaaca
gggattgagcaattattgccagcaccgatgacattgcgtgaggcgcaactcaaggtgcat
gttgggcaaaattataatttgaatcaaatcaaaaatacgttaatgatgatgggttataca
ccagttaaattggtccaaacacctggtgaatttgcacaacgtgggtcaattatggatatt
tacccattaactttagaagatccaattcggctggatttctttgatgatgaacttgatcag
ttaaaaagttttgatgttgcaacacaaaaaagtattcagacgttagatgagatggccatc
gaaccagcaactgattttgttgtctcggaagcaaattatgatcgagctaaattggctatt
gaaacggcatttagtcaatatcgtagccaattgcagggtgttgaaaagaagcatgccaca
gatggttttaacctgacacagcatgtgttaaatgaaagacaacgtggtagtgaactacta
ccctatgcgaaacatttttttgatggacaaataacgatctttgattatttaaatgatgat
gctttaattgttcttgacgaatacacacgaataacagaaacaagtctacaacagttaacg
cgtgatcaagaatggattgataatcaaacgactagttaccaattattaccaaatcaaacg
tggcgagctgatttaaatgacctattagggcacaatacacgcccaacattgtatcttgct
aactttcaacgtgggctgaatcgcgttaaatttacaaatattgtagaagtcactacacga
ccagccaatcaatattatggtcaactgtcagcacttaaaaatgatttggattatgcccaa
aatgctggaacgacagtcattttgctcattaatgatgctaaaaggcgacgagattttagt
gcatcgttagccgatctaacaataccaatcagtgaaaccaaaaatatactaccgcatcaa
gtacaattaacagcaggtaatttaacagcgggatttgaatggccacaactacatctgaca
gtgctaacagaacacgaattgtttgctcaagccagaagatcagcaccaaaaacacgtaaa
attgctaacgcggagcgcttaaaatcgtacaatgagttaaacgttggcgattatgttgtg
catattaatcacggtattggccgttacgaagggctacagactattgcggttgatggtggc
aagcaagattatctgtctattgcctaccaaaaaaatgccaagatttttattccagtcaca
cagcttaatttaattcaaaaatacgttggggcttcggatacagctaaagcacctaaatta
aataaattaggtggtagtgaatgggcaaagaccaaacgacaagttgctgccaaaattgaa
gacattgctgacgacttgttagcattatacgcgaaacgtgaagcgcaacaaggatatgct
tttccgcctgatgatacgaatcaactgaagtttgatacagcttttggatatcctgaaacg
ccagatcaaatccgctcaattgaagaaataaaagtcgatatgcaaaagccacgaccaatg
gatcgactattagttggggatgttggttttgggaaaacagaagtagccttacgtgccgtg
tttaaagcggcaaatgaggggaaacaagtcgctttcttagccccaactactattcttgtg
cagcaacattatgagacgatactcgcgcgttttagtgattttccagacattaaaattggt
gttttaagtcgttttcaaacaccatctcaaaataaagcagtgattaaacagcttaataaa
catgagattgacgtcgttgttgggacacatcgtttgctcagtaaagacgttgatttttct
gatttaggcctcttgattattgatgaagaacaacgatttggtgtgaaacataaagagcgt
cttaaacagttacgatctagtgtcgatgtgctgacgttaacggctacaccaatcccacga
acattgaatatggcaatggtcggcgcgcgtgatttgtcaattattgaaacaccacctgcc
aatcgttatccgattcagacatatgtcatggaagctgattggacgattgtgcgcgatgct
attgaaaaagaattagcccgcaatggacaagttttttacctgcacaatcgcgtagcagac
ttggatcgtgtggccagccaaattactgatttagtaccatcagcacgtgtggcagctatt
catgggcaaatgtctgaaagtcaactagaaagtattttatatgattttttaaatggggac
tacgatgtcttggtgaccactactattattgaaacaggggttgatattcctaatgccaat
acgttaattgtggaaaatgctgaccatatgggcttagcacaattatatcaattgcgtggg
cgagttggccgttcagctcgattggcctatgcttacttcacttatccctttatgcgtaca
ccaagtgaagaagcagagaaacgcttagaagcaattcgcgattttactgaactcggttca
ggtttccgcattgcaatgcgtgacttaagcattcgtggtgctggtgatatacttggtaaa
caacaacacggatttattgattccgtgggctatgatatgtatactaaaatgcttaaagag
gctgtggcagagaaacagggtaatgcaccgaaagatcagttacaagagacagatgctgaa
ttaattcttggtgtgttggcttatctaccggacgagtatgtctcagataatgcgcaaaaa
attgagttatatacacgtattcgtcaagcaaaaacagatgataactttgaagaaattgag
tctgatatgttggaccgctatggtgaaatgcctgatgaagttgctcgtttactactagta
ggtcagattaagcaacttgctgatcaagcacaagtgactaatattcggcgacaaaggaac
caagtaaccattcaatttagtgatcaggctacacaacaattatcaggagaagctattttt
gaaactttggttgatgtgcctttgaaagctgctgttcgtacggaagctggggatttacag
gttattttaactgttaacgatgttgctgaaagcagtatctggttaaatgtgctgcgcgaa
ttcctagtagtggttgtcaatcgcgacatgccacaagacaaaaatgaataa
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