Larimichthys crocea (large yellow croaker): 104917656
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Entry
104917656 CDS
T04659
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lco01001
]
104917656 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lco04054
]
104917656 (ciita)
Enzymes [BR:
lco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104917656 (ciita)
Protein kinases [BR:
lco01001
]
Serine/threonine kinases: Other
TAF1 family
104917656 (ciita)
Pattern recognition receptors [BR:
lco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104917656 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
AAA_16
Rx_N
LRR_14
nSTAND3
AAA_22
AAA-ATPase_like
AAA
TsaE
Motif
Other DBs
NCBI-GeneID:
104917656
NCBI-ProteinID:
XP_019130473
LinkDB
All DBs
Position
XII:complement(450340..470473)
Genome browser
AA seq
1638 aa
AA seq
DB search
MVDINVWGANIITMTQFKEVLDGVRLALTSAPVAEIHSLLESLVEERIISEAYSNSLTLH
GLTRGMTPERVRKESACKPGSDQMYSPGSTTHRHFNQGQLTQVCQESVVDEHNSAWSTSP
PVMDQHHLNHRLCSTPLICEYQSSLGLDDEITELLRSAKSMQKQVSDNERANKGNSEDEK
EWLEQVEEAARRIAVPLWQHWDRGQMMLLPLVSSMTAGCENTVTDSGAQCNGLNMDEETE
LAIACRTLNLYSDSFNCIDTGLALPNFTLDKEEADDTPKGLSFPTYESVLTMGLNTDHLD
VAGAARNGSPVEACAATDTNNNTWMTDKTTDTSEDLLSLMGDTVLYGSPGFTDDNAHLFS
SCTLNDICGNTQDNSLYSNTDDGENVFWAPYGTKTCSTDAVDSQWGANMQQVDEDPFMCP
GFGELPAGGKMQELDQVLFNYPEFDSLLDLCLGEDCLKTIDPDVLLGDPWFNCEEELTCS
DIPMPTELPSPDSNQQGQEDKLTGEINNRRKRTRASRSKQCTNENTPSGPKRQRTAGRPK
PKERQAEPVISQRTDSGSEPSPAEGASLPTTPQRIFHLPPSIQFITIPETTGYKVVQTLR
LSPPVIGLPLPNSAASPTYIFVPAPSPSCKRQMPPLSPVDGAVVPVQASSSPPGSLSDTA
SKAMSPPLCTSPVSPSNVMSACKESPLPQSPTVPDIPQAVKDYIQEAKARMCQDLEANLS
LTSHHVDVQVSQRDIVRTAKPTNKVLDKELVIMGDTDRQKSLLRPSQIFEGSNGDKLKRY
ILLLGNAGMGKTTLIRKLCLDWSRDCIPQFDFVFLLDGKALTLTESTFSLQSLLLNVSSF
VPPCLDPEAVFAQILAAPKRVLIIFDGFDELRDYESLLQTQEKDLTTSLQRDSKAQTYTV
RQLYSAILQRILLPGCTLLLSTRPKGTASQLLRRTDSFLEMCGFTPTDIETYLSQYVTDP
ALRASALDCLKNCSYLHLLCWNPGLCQLVCWLLQESKGLEVLPRTLTGLCHQVLRLKMEM
DSKTTHSEAEPQTEIPVQSGEETQTQISSSSKVKRCQRNTRTKSSSQVHTRPQRARRTKK
QEKEEDEVDQEEMESGSEEVDRTQQRELLSQLSSLAWECVKANSSILPTGRLTSAKLKEF
GYRTGLFTSYHLRRQVVSSGETKGGGRGDKEDIRREVKEDSGNAYAGDDNIMLWANPFLQ
SYLAGVHLSLSRTVSDRTFLQTLPFQSGPKARRRPQREELELTQRFAVGLLFHDRRELKR
LHSHTATAFRDMVVGKQALVTKHLEGLLYGDLSPAQVLEACHYVYEASSTHGDGSRDSGS
TELVGHLASNLPEVLTFRGVPLNPADVFAVQNVLERGGTEGRSFCLDLEDSGIQISGLRA
LVGLNNLNTYRACIADVISLWEQLEQGDDEGLRQRAVSKLKIHPLKATQMCHIEHLAKLV
NIHTQKRLSDSPSQLDSILAEGVPAVKELHKLEFELGPENGPLALPMLWELLPGLHNLQH
LDLENSKIGDKGAEKLADALVSLCFLEVLNLSQNCIGNEGVKKLATTLKGLPKLHCLSLY
SNVISDEGAESLADVLPHVASLTDLDVKYNKLTDVGAQSLGVSLRNCKRMKTLRMWNQCI
PYGVFERLQQQDNRILCH
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggtggacatcaatgtctggggagcgaatatcatcaccatgactcagttcaaggaggtt
ctggacggggtgcggctggctctgacttcagcacctgttgccgagatccattctctgctg
gagagtttggtggaagagcggatcatctcggaggcctacagcaatagcctgactttgcac
ggacttaccagggggatgacacctgagcgagttcgcaaggaatcagcatgtaaaccagga
tctgatcagatgtattctcccggatcaaccacccaccggcacttcaaccaaggtcaactc
actcaggtgtgccaagaatctgttgttgatgaacataacagtgcatggtccaccagccca
ccagtgatggatcaacaccacctgaatcaccggctctgttctacgccgctgatatgtgaa
taccaaagcagtctaggattagatgacgaaataacagaactgctgagaagtgcaaaatca
atgcagaagcaagtaagtgataatgaaagagcaaataaggggaattcagaggatgagaag
gagtggttagagcaggtagaggaggcggctaggaggatagccgtgcctctgtggcaacac
tgggacagaggacagatgatgttgctccccctggtttcttctatgactgctgggtgtgaa
aacacagtgacggatagtggagcacaatgcaatgggttgaacatggatgaggaaacagaa
cttgccattgcttgtaggacactaaatctgtattctgacagctttaactgcatcgacaca
ggacttgcgttgccaaacttcacactggataaagaagaagccgatgacacaccaaaaggt
ctctctttccctacatatgagagtgtgttgaccatgggattgaacacggatcatttggat
gttgcaggagcagcaagaaatggctcgcctgttgaggcctgtgcagcaacagacacgaac
aacaacacatggatgacggacaaaacaacagacacgagtgaggacctgctcagtttgatg
ggagacacagtactgtatggctctccaggatttacagatgacaatgcacatttattttct
tcttgtacactaaatgacatttgcggcaacacacaagataactcattatattccaacacg
gacgatggagaaaatgttttctgggctccttacggtacaaaaacgtgcagcactgatgca
gtggattcacaatggggtgccaacatgcagcaagtggatgaagacccattcatgtgtcct
ggctttggagaattaccagcaggtggcaagatgcaggaattggatcaggtcctgtttaac
taccctgagtttgacagtctactagatctatgcttaggtgaagattgcctcaagacaata
gatccagatgtgctccttggcgacccatggtttaactgtgaggaggaactcacctgcagt
gacattcccatgccaacagagttacccagcccagacagcaaccagcagggacaagaggac
aaactaacgggcgaaataaataacagaaggaaaagaaccagagcttcacgttcaaaacag
tgcactaatgagaacacgccatctgggccaaaaaggcaaagaacagcaggtcgaccaaaa
cccaaagagcgacaggctgagccagttatcagccaacgaactgattcaggatcagagcca
agtccagcagagggagcgagcctgcccaccactccacaaagaatctttcatcttcctccc
tccattcagtttattaccattccagagactacaggatataaggttgttcagacactgagg
ctctcacctccggttattggcctcccactccccaattcagctgcttcacctacttatata
ttcgttcctgctccctcaccatcctgcaaacgtcaaatgcctcccctctccccagtggac
ggtgcagtagtgccagttcaagccagctcatccccaccaggatctctgtcagacactgct
agcaaagccatgtctccccccctttgtacctcacccgtctcccccagcaatgtgatgtct
gcatgtaaggaatcgcctcttcctcagtctcccactgtccctgatattccacaagcggta
aaggactacatacaggaagccaaagcacgtatgtgtcaggatttggaggcaaatcttagc
ctgacctctcatcacgtcgatgtgcaagtgagccagagagacatagttcgcactgcaaaa
cccacaaacaaagtcctggacaaagagctagttattatgggagatacagatcggcaaaag
agcttgttgcgaccaagccagatcttcgaaggctcaaatggagacaaactcaaacgctac
atattgctacttggcaatgctggcatgggaaagactaccctgatcaggaagctgtgtctt
gactggtccagagactgcattccgcagtttgactttgtcttcctattagacggcaaagca
ctcacattaacagagtcgacctttagccttcagtccctcctattaaacgtctcctccttt
gttcctccctgtttggatccagaggcagtgttcgctcaaatccttgcagcccctaagcgt
gtgctcatcatttttgatgggtttgatgagttgcgtgactatgaatctctactccaaact
caagaaaaagacttgacgacatcattgcagagagacagcaaagcacagacatacacagta
agacagttatactctgccatccttcagaggatcctccttccaggttgcactcttttactt
tctaccagaccaaaaggtactgccagccagctactccggcggacggacagctttttggag
atgtgtggcttcaccccgacagacatagagacatatctgtcccagtacgtcacagatcct
gccctcagagcatctgctttggactgcctaaaaaactgcagctacctacatctcctgtgc
tggaaccctggactatgtcagttggtctgctggcttttacaagagtccaaaggtttggag
gtcctaccgagaactttaaccgggctctgccatcaagtgcttcgtctgaaaatggaaatg
gacagtaaaaccacacactcagaggctgaacctcaaacggaaatacccgtgcaatctgga
gaagagacccagacacaaatctcaagtagttctaaagtgaagaggtgtcaaagaaatact
cggacaaagtccagttcacaggttcacactcgtccccaaagagcaaggaggaccaaaaaa
caggagaaagaggaagatgaagtggaccaagaggagatggagagtggtagtgaggaagta
gatagaacacagcagagagagttgctgtcccagctgagttctttggcctgggagtgtgtc
aaagcaaactcctccatcctcccgacagggcggctcacatctgccaaactcaaggaattt
ggctacaggacagggctttttacctcctaccacctgaggaggcaagttgtctccagtggt
gagacaaagggaggaggaagaggggacaaagaggacattagaagagaagtgaaagaagac
agtggaaacgcctatgctggcgatgacaacatcatgttgtgggccaacccttttcttcag
agttacttggcaggggtccatttgtctttgtcaaggactgtttcagatcgcaccttcctt
cagacccttcctttccagtcaggtccaaaggcacgtcggcgtcctcaaagggaagagctt
gagctcactcaacgatttgcagtcgggcttcttttccacgacaggagagagctgaagagg
cttcactcacacacagcgactgcctttagagacatggtggtcggcaagcaggctttagta
acaaagcaccttgaaggtcttttgtacggtgacctaagccctgcccaggtcctggaggct
tgtcactatgtttatgaggcaagttcaacacatggtgatggtagcagagacagtggcagc
acagagctagttggtcacctggcatcaaatctcccagaagtcctcacatttcgtggagtt
ccactaaacccagcggacgttttcgctgtgcagaacgttcttgaaaggggtggaactgag
ggtagaagtttttgtttggatctggaggattctgggatacagatctctggactcagagct
ttggtgggactcaacaacctgaatacatacagggcatgcattgctgatgtcatctcctta
tgggagcagctggagcaaggtgatgacgaaggactccgacaacgggcggtatccaaactc
aagattcaccccctaaaagccacacagatgtgtcacatagagcacctggcaaagctggtc
aacatccatacgcaaaagaggctgtcagacagtcccagccaattagattccatcttggca
gagggagtaccagctgtcaaagagctgcacaagctggagtttgagcttggtccagagaat
ggtccccttgctctcccaatgctgtgggaactcctgccaggcctacacaacctacagcac
ttagatctagagaatagtaagataggggacaaaggagcagagaagttggctgatgcttta
gtctcactctgtttcctggaggtactcaatctgtcacagaattgcataggaaacgagggg
gtgaaaaaactggcaaccacgctgaagggtctgcccaaactgcactgtttaagcctttac
agtaatgtgatttctgacgaaggggcagagagtttagcagatgtcctgccacatgtggct
tccctcactgatcttgacgtgaagtataacaagctcacagatgttggagcacagagcctg
ggagtcagtctgagaaactgtaaaagaatgaaaactttgaggatgtggaaccagtgtatt
ccatacggagtgttcgagagacttcagcaacaggacaatcggattctttgccattaa
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integrated database retrieval system
