Larimichthys crocea (large yellow croaker): 104917955
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Entry
104917955 CDS
T04659
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lco03036
]
104917955 (chd5)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104917955 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
104917955
NCBI-ProteinID:
XP_019110498
LinkDB
All DBs
Position
VI:complement(6678881..6715085)
Genome browser
AA seq
2001 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDEGERNAVPLTPLDSFFSDSDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQARVDSDLEETSEVEEERERPEIGSESESSTYGPTKKKKKKPKE
KKEKKPRKKKRDEEDDDDDDDDGNMKEPKSSSQLMQEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAMETVTVA
QPTSVSSSQPSSQLGPIKKAKTKEGKGPGVRKRSKSVKEVKKKPKPKKTKSKLGQSGKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEE
PAGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLK
GKVQKILHWTWGEPPLPAELPAGPDGKPSDPLTKPPLKGHPEREFFVKWAGLSYWHCSWV
SELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNSEKRKSKDPQYAVMEERFYRYG
IKPEWMVIHRIVNHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYDNHKVSYWDHRE
QILGEDQRPLVVRKGKKLKENHPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFEMWAPDFYVVTYTGDKDSRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSY
ELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYK
YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHN
DIQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEMEAARTMGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTEI
QNMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRHSRRQL
KSEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKS
EREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHV
NGKLSSPDLIPIGMELKKLTESLSSDPNTPVPASPVATQPGTPIPPEKTDSLLGTAEDKE
TTEQDSKKLSEQETSSAEPASVSEKGADSEESKASSEEKMGDERDRTESPSTKTEPSANA
KESALKQTDLSSSQTSPKMEPCKDTEKSSEKGDTDSPLAKIEDKENKPDDLKSEDALEGR
LNGDKDTLDELDDSRKEDKNGFKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIWH
RRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLLE
QALVIEEQLRRAAYLNMTQDPSHPAMALNTRFTEVECLAESHQHLSKESLAGNKPANAVL
HKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQPFS
QGGFGCSQMYSSSFGGGFRGPGGQPMVNYSQMPLGPYVSVSTNGPPPPTSHLDKKSLDSL
RDVATPDLKSGKPSDVICIED
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagacgaggatgatgaaggtgagcgcaatgctgttcctctcacacccctcgacagc
ttcttctccgacagcgactccctcaaacaacaaaagaagaagaagcccaaaaagatgaaa
gaggggaaaatgcccaaagttaagaagaggaaaaaggagggaggaatccaggcgagagtt
gacagtgacctggaggagacctcagaggtggaggaggaacgggaacgtccagaaataggc
tctgagagtgagagcagcacatatggcccgaccaaaaagaagaagaagaaacccaaggag
aagaaagagaagaagccgaggaagaagaagagagacgaggaagatgacgacgacgatgat
gatgatgggaacatgaaagaacccaagtcatccagccagttgatgcaagaatggggtctt
gaagacgttcagtacggcttcaccgaagacgactataaaaccataaccaactacaaggct
ttcagccagttcctcaggcctctcattgccaagaagaacccgaagattcccatgtcaaag
atgatgacagtgttaggggccaagtggcgagagttcagtgccaacaacccgttcaaaggc
gcatctgccaccgctgtggccgccgctgtggctgccgccatggaaacggttactgtggcg
cagccgacgtctgtcagcagcagccagccgagctctcagctggggccaatcaaaaaagcc
aaaaccaaagagggaaagggaccaggagtcagaaagagaagcaagtctgtgaaggaggtg
aagaagaaacccaagccgaaaaagaccaaatcaaagttgggccaaagtgggaagaagaag
aaagcatcctcgagcgaggaggactttctggaggagtcggactttgatgacatcagcatc
cacagtgcctctgtgctttctgatacctcgggtgccgccaccaagaaaaaggcccgacgt
gggcggaaaaaaaggaaaaaggaagatggtgacggttatgagacagaccaccaggactac
tgtgaggtctgccaacagggtggagagatcatcctgtgtgacacctgtcctagagcgtac
cacctggtctgtctggacccggagctggagaaggcccctgagggcaaatggagctgtccg
cactgtgagaaagagggtatccagtgggaggccaaagatgaagaggaggaagaggaagag
ccagcgggcgaggaagaggatgaccatatggagttttgcagagtgtgtaaagacggagga
gagctgctgtgttgtgacacctgcccatcttcttaccacatccactgcctcaacccacct
ctccccgagatacccaatggggagtggttgtgtccacgctgcatgtgccctcccctcaaa
ggtaaggtccagaagattctgcattggacatggggagaacccccattgccagcagaactg
ccagcaggccctgatggcaagccaagtgatccactgaccaagcctccactcaagggccac
ccagagagggagttcttcgtaaagtgggctggcctttcgtactggcactgctcctgggtc
agcgagctgcagttggagctgtatcacacggtcatgtatcggaactaccagcgtaagaac
gacatggatgaacctccaccgtatgactatggctccggagaggaggagctcaacagtgag
aagcggaaaagcaaagacccccagtacgctgtgatggaggagcgcttctaccgttatggc
attaaaccagagtggatggttatccacaggatagtcaaccacagttttgataaggatggc
gacgttcattacctgattaagtggagagacttgccctacgaccagtgcacctgggaggtg
gatgattttgatgtcccagaatatgacaatcataaagtgtcgtactgggaccacagggaa
caaatactaggggaggatcaacgccccctggtggtgaggaaaggaaagaaactcaaagag
aaccatccaaagagggaggtccctcctgatgctcccatcatagatccaaccatcaaattt
gagcaccagccgtggtacattaacgccactggaggaacgctgcacccttaccaactggaa
ggcctgaactggttgaggttctcctgggcacagggcacggacacgatcctggctgatgag
atgggccttggaaagacggtgcaaacaatagtgtttctctactcactctataaggagggt
cactctaaggggcctttcttggtgagtgcgcccctctccactatcataaactgggagagg
gagtttgagatgtgggctccggatttctacgtggtgacatacactggagacaaagacagc
cgggcaatcatcagggagaacgagttcacttttgaagacagcgcagtaaaatcaggacgc
aaggtgtttcgtatgaagaaagacactcctatcaagttccacgtgctgctgacatcctat
gaactgatcactatagatcaagccattctgggctccatcacatgggcctgcctggtagta
gacgaggctcatagactgaagaacaaccaatcaaagtttttcagaattctcaacgggtat
aagatctactacaagctgctgctcaccgggactcctcttcagaacaacctggaagagctg
ttccacttgcttaacttcctcaccccagagcgcttcaacaacctggaaggtttcctggag
gagtttgctgatatctccaaggaggaccagatcaagaagctccacgacctgcttggccct
catatgcttagaaggctgaaagctgatgtctttaagaacatgcctgcaaagacagagttg
attgtcagagtggagctcagccccatgcagaagaaatattacaagtttattttgacgcga
aactttgaggctctgaactccaaaggtggagggaaccaagtgtccctgctcaacattatg
atggacctgaagaagtgctgcaaccatccctatctgttccctgtggctgctgtggaagct
cctgtattacccaatggctcgtatgatggcaacctactggtgaagtcctcaggaaaactg
acgctgcttcagaaaatgctaaagaaacttaaagacgaaggacacagagttctcattttc
tctcagatgacaaagatgttggatctgcttgaagattttctggagtttgagggttataaa
tatgaacgtatcgatggagggattaccggaggcttaaggcaggaggccatcgaccgcttc
aatgcaccaggcgctcagcagttctgcttcttgctttcaacacgagctggaggtcttggc
atcaaccttgcgagtgcagacactgtcatcatatacgactctgactggaatccacacaat
gacatccaagcttttagcagagcccaccgtataggccaaaataagaaggtgatgatctat
cgttttgtgacacggggctcggtggaggaacgaatcactcaggtggcaaagaggaagatg
atgctgacccacttggtggtgcggcctggcctgggctccaaaactggctccatgtctaaa
caagaactggacgacatcctcaagtttggaactgaggagcttttcaaggatgaaatggaa
gctgcacggacaatgggtgacaacaaagatggtgaggagggcaatgtgattcactatgac
gacgatgctatttcgaagctgttggaccgcagccaggacgccactgaagacacagagatt
cagaacatgaacgagtacctgagctccttcaaggtggctcagtatgtggtgaaagaagag
gatggagaggaggaggtggagcgggagatcatcaagcaggaggagaacgtggatccagac
tactgggaaaaactccttcggcaccattatgaacagcagcaggaggatctggctcgcaac
ctcggcaaaggcaaacgcattcgaaagcaggtcaactacaatgacacgacccaggaggac
caagaatggcaggatgatctttcagacaatcagtcggagtactctgtggggtccgaggac
gaggacgaagatttcgaagagagacctgaaggtggtcgcagacattctcgtcggcagctg
aagagtgagaaagacaaacctctgcctccgttactggctcgagttgggggcagtattgag
gtcctcgggttcaatgctcgccagaggaaagccttcctcaatgccatcatgcgctggggc
atgccacctcaggatgctttcaactcccattggctggttagagacctgagagggaagagt
gagcgcgagttcagggcctatgtgtctctgttcatgagacatctatgtgagccgggggca
gatggagcagagacgtttgccgacggagtcccacgcgaaggactgtctcgtcagcatgtt
cttaccaggatcggagtcatgtcccttgtcaggaaaaaggtgcaggagtttgagcatgta
aatggaaagctgagttctccagatctgattcccatcggcatggagctgaagaagctgact
gagagtttatcttctgatcctaacacccctgtgccagccagccctgtcgcaacacaaccc
ggcactcccatcccgccagagaagactgattctctcttgggtaccgctgaggacaaggag
accacagagcaagatagcaagaaactgtcagagcaggaaacctccagtgcagagccagca
tctgtatctgagaaaggagctgacagtgaagagagcaaggccagctcagaggagaagatg
ggagatgagagggacagaaccgagtcaccctctacaaagacggagccatctgccaacgca
aaagagtccgctttgaaacagacggatctgtcatccagtcaaacctcacctaagatggag
ccatgcaaagacacagagaagtcctcagaaaaaggagatactgattctcctctggcaaaa
atcgaagacaaggaaaataagccagatgatctgaaaagtgaggatgccttagagggccga
ttgaatggagacaaagacactctggatgagttggatgacagcaggaaggaggacaaaaat
ggattcaaagccaagttcatgtttaatatcgctgatggaggttttacagagttgcacacc
ctctggcaaaccgaagagcgagcggcgctgtcttctggaaagatgcatgacatctggcac
cgtcgtcatgactactggctgttggctggtatcgtaacacatggctacgctcgctggcaa
gacattcagaatgatccacgctatgctattttgaatgagcccttcaagactgagatgcat
aagggcaactacctagagatgaagaacaagttcctggctcgccgcttcaagttgttggag
caggctctagtcattgaggagcagttgaggcgggcagcttacctgaatatgacccaggac
cccagtcacccggccatggctctcaacactcgcttcactgaggtggaatgtctggcagag
tcccaccagcacctgtccaaagagtccctggctgggaacaagcctgccaatgctgtgctg
cacaaagtgctgaaccaactagaggaacttctgagtgacatgaaagcagatgtgacacga
ctgcccaacatgctgtccaggatcccgccggtgtcggcccgtctgcagatgtctgagagg
agcatcctgagccgcctcaccagccgagggagcgagcctccgccacaacagccttttagt
cagggtgggttcggctgctcccagatgtacagcagcagctttggtggaggattcagagga
ccaggtggacagcccatggtcaactacagtcagatgcctctgggaccctacgtcagcgtg
tccactaatggccctccaccccctacaagccatctggacaagaagtcacttgactccttg
agagatgtggctacgcctgacctcaagtcgggcaaacctagtgatgtcatctgtatcgag
gactag
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integrated database retrieval system
