Larimichthys crocea (large yellow croaker): 104918058
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Entry
104918058 CDS
T04659
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03430
Mismatch repair
lco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104918058 (pms2)
03460 Fanconi anemia pathway
104918058 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lco03400
]
104918058 (pms2)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
104918058 (pms2)
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Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104918058
NCBI-ProteinID:
XP_027145623
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Position
XVI:10694479..10699598
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AA seq
853 aa
AA seq
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MLGKLASTSEPAKAIKAIDKHSVHQICSGQVVLTLATAVKELVENSVDAGATNIDVRLKE
CGAELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSNL
SVVTCHESSQVGTKLVFDHKGHLVQQSPNPRQQGTTVSLQQLFYTLPVRHKEFQRNIKKE
YAKMIHVLQSYCIISTGVRITCSNQNGQGKRSTVLSTSGSQSMRDNIGAIFGPKQLQSLL
PFQQVSPAENVIEEYGLKDADLPKQLFTITGFVSRGDHGVGRSATDRQFFFINNRPCDPL
KVTKLVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQIFLQEEKLLLAILKTSLI
NMYEAGVNKISLNYTPTPSTNTTTSEICQVVSSNDKVPEPGEEPVRQTPKSSLNLAGLKA
AFSSSSFSSSSGTKSSVAKASNCAPTQKTLQSFFKGTVIAPNCTPSAKFPLKPTKDLGKC
SPVGKSVLDGFRYGTMSSDTDSERDSAVSICDTSVELSSPDLSADKPCVKDETFEETSDN
SHGVPENPELKTERCTSNEDCPVSPDAKRARTEKTHFPTEHKSENKCFERSSSMVDAPVL
LQRRTVPLQFSFHELAGKVKRLEDQKKQKASDDLCYRRFRAKILPGENQSAEDELKKEIS
KDMFKQMEIIGQFNLGFIITKLNSDIFMIDQHATDEKYNFEMLQQHTVLQGQKLIAPQKL
HLPAVSENILIENIEIFRKNGFEFLVDEDGQVMERVKLVSLPTSKNWTFGPADIEELIFM
LSDSPGVMCRPSRVRQMFASRACRKSVMIGTALSVSEMKKLLVHMGEIEHPWNCPHGRPT
MRHLANLDIISKD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcttggtaagttagcgagcacttctgaacctgccaaagccatcaaggccatcgacaaa
cactcagtccatcagatctgctcgggacaggtcgtgctgactttggccacggctgtcaaa
gagctggtggagaacagtgttgatgcaggcgccaccaacattgatgtcaggctgaaggag
tgtggagctgaactagtggaagtgtcagacaatggcaaaggagtagaagaggccaacttt
gaaggactgactttgaagcatcacacgtcaaagctgagggacttctctgatctcatccac
gtagaaacatttggtttcagaggtgaagccctcagttctttatgtgctctgagtaacctg
agtgtggtgacatgccacgagtccagccaggtggggaccaagctggtgtttgaccataaa
ggccacctcgtgcagcagtcacccaatccccggcagcaaggcaccacagtcagccttcag
cagctcttctacaccttgcccgttcgacacaaggagtttcagcgcaatattaagaaggag
tatgccaaaatgatacatgtcctgcagtcctactgtatcatctctacaggagtgcgtatt
acctgctccaaccaaaatggacaggggaagcgcagtacagtcctcagcaccagtggcagt
cagagtatgagagacaatataggagccatatttggaccgaaacagctacagagtcttctg
ccttttcagcaagtgtccccagcagaaaacgttattgaagaatatggactcaaagatgca
gatctgcccaaacagctgtttaccatcacagggtttgtgtcacgaggagaccatggtgtt
gggagaagtgccacagacaggcagttcttttttattaacaaccggccatgtgatcccctt
aaggtgaccaaacttgtgaatgaagtgtatcatatgtacaacagacatcaatatccattt
gttgccttgaatatagctgttgcctctgagtgtgttgacgtgaacgtaactccagacaaa
cgacagattttccttcaggaggagaaactcttgctggctattctgaagacatctctcatt
aacatgtatgaagctggagttaataagatcagcctgaactatacacccacacccagcacc
aataccacaacatctgaaatctgtcaggttgtctcgtctaatgataaagtgccagagcca
ggagaggaaccagtcagacagaccccaaagtcctccctaaacctggccggcctaaaagct
gctttttcaagctccagtttcagctccagttctgggaccaaatcaagtgtggcaaaagct
tccaattgtgccccaacacagaaaacactccagtcttttttcaaaggcactgtcatagct
cctaactgcaccccaagtgcaaaatttcctttaaaaccaacaaaagatttaggcaaatgc
tccccagtgggaaagtctgtattggatggtttcagatacggaacgatgtccagtgataca
gactctgaaagagacagtgctgtttccatttgtgatacttcagtggagttgagttcccct
gatctatctgctgacaaaccctgtgtgaaagatgaaacatttgaagaaacatctgacaat
agtcatggtgttcccgagaacccagagttaaagactgagcgatgcacttccaatgaggac
tgtcctgtgagcccggacgccaagagggccaggacagagaaaacacatttccctacagaa
cataaatcagaaaataaatgttttgagagatcctcctcaatggtcgacgctccagtcctc
ctacagaggaggacagtgcctctccagttctcttttcacgagctggcagggaaggtgaag
aggctagaagaccagaagaaacagaaggccagtgatgatctgtgctatcgacgcttcagg
gccaaaatcctccccggagaaaaccagagtgcagaagacgagctcaagaaagagatcagt
aaagacatgttcaaacagatggagatcatcggtcagtttaacctcggcttcatcatcacc
aaactcaactcggacatcttcatgattgatcagcatgccacagatgagaaatacaacttt
gagatgctgcagcagcacaccgtgctccaaggacagaaactcatagcccctcaaaaactt
catctccctgctgtcagcgaaaacatactcatagagaacatcgagattttcagaaagaat
ggctttgagttccttgtggatgaggacggtcaggtgatggagagggttaagctggtgtct
ctacccaccagtaaaaactggacatttggcccagctgacatcgaagagctgatcttcatg
ttgagtgacagtccaggggtcatgtgtcgaccatcccgcgtcaggcagatgtttgcctcc
agagcctgtcgaaaatctgtgatgatcgggactgctttgagcgtcagtgagatgaagaag
ctcctggttcacatgggggagattgagcatccgtggaactgtcctcatggcaggcccacc
atgagacaccttgccaacctggatatcatttcaaaagactga
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