Larimichthys crocea (large yellow croaker): 104918078
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Entry
104918078 CDS
T04659
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lco01002
]
104918078 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104918078 (usp42)
Enzymes [BR:
lco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104918078 (usp42)
Peptidases and inhibitors [BR:
lco01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104918078 (usp42)
Ubiquitin system [BR:
lco04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104918078 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
104918078
NCBI-ProteinID:
XP_019127623
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All DBs
Position
XVI:complement(10673871..10683609)
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AA seq
1224 aa
AA seq
DB search
MTIVDRSSEKSDHESVGCKRSPFTSGDVGMDGSCSSSWAVGPTMPSDSPRLKAPGGCLGP
TPGAVVYNSTPSSVDRPKEQVISSDDGIDLPQKVLFAPERLNLKWTQVHRIGAGLQNMGN
TCFLNSALQCLTYTPPFANYMLTREHSKTCHEPGFCMMCTMQNHIIQVFANSGNVIKPIG
VLNELKRIAKHFRYGSQEDAHEFLRYTVDAMQKSCLPGSKLDRQTQATTFIHQVFGGYLR
SRVKCLNCKAVSDTFDPFLDITLEIKTAPSVSKALEQFVKPEQLDGENAYKCTKCKKMVT
ASKRFTIHRSANVLTLSLKRFANFSGGKITKDVKYPEYLDLRPFMSQSQGEPQAYGLYAV
LVHSGFSCHAGHYFCYIKASNGQWYQMNDSSVSVSDIRSVLNQQAYVLFYIKSSDMKKTG
DYSHMSHNSGIPGQSSPRPVVIPRINTTVHHNNIGFIGPQLPPHMTKSALHVNGNGSLRD
YPTNSKPSTSSSVVGKPSHGLASSSSSISHSISRPTMLPDHDKRQKLSFFIGQGKQNRPS
SSSSSSSSSSSSYSQPSSASSSSSSSSLSSSQSTSDVHSDIRFVPRQINHVNGTSCSNGN
RHTGGNGASFLVPYGQESSEESDQENTGTLDNGCLAKSHLNGNNRTGEVFNKSAQATNGE
SGVHHNGNGLNGPTYGVSKSSQNGHHYGHHKVNGHSTPDKIADNNHSSSSSVATNGLDSD
HSQTSEETHNSASSQATSSQSVHPPPASESQHLSTPDTRAKTVSEPLPQHTASSAVSSLP
SATATKTHPVPSRESASSSAHHGNVNAALSTPPECSQGTNGASAAPQKVSRVEDDAVDQP
QTSAPSAGTEGRTGAKEQHQSKPSPKGNEGQSSRDRERDRLYSDWSRDRERHYRDRSQER
ESDGDRHRYRRDYRDHQHHRSYRDRLPPHNRSSRDWDSERRWERTLHHPRERDRDRCSHH
YHHYHHYRSREDWDRRQRGHGYPNREESHSRWRWQEESRESRAMKDKTNGRERDYYSSKE
ETSSPTTAAETSTKSKGSPPRARPSSFESAQNREDQNHKRTSDPLSKERDDSSEARRSKK
HKKSKKKKKSKDKDRHRESGSSDVDSDRGTETKKRKKRKRRQRDSDGEQHSPGASRSHKN
RSSEERESRKRRYYDTKDTKHDNGFSPEKCRRTEYADGSGDHLLPTNHTSPTNGSTHRHL
NGHTGNGYSQANGDSHGFSSGLKH
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagaaaagtctgaccacgagtcagtagggtgtaagcga
tctcccttcaccagcggagacgtggggatggacggcagctgttccagcagctgggcggtg
ggtcccacaatgcccagtgactctccgaggctgaaggctccaggaggctgcctgggcccg
acgcccggagctgtggtctacaacagtacaccctcttctgtggaccggcccaaggagcaa
gtgataagcagtgatgacggcattgacttgccgcagaaggtcctcttcgctccagagcgg
ctcaacctaaagtggacccaggttcaccgcattggcgcaggcctgcagaacatggggaac
acctgctttctgaactcagccctgcagtgtctcacctacacccctccgtttgccaactac
atgctgacacgcgagcactcaaagacatgtcacgagccggggttctgtatgatgtgcacc
atgcaaaaccacatcattcaggtctttgccaactctgggaatgtcattaagcccatcggt
gtgctcaatgagctcaaaaggattgcaaagcacttccgctatggaagccaggaggatgct
catgagttcctgcggtacacagtggatgctatgcaaaagtcctgcttacctggatccaaa
ttggacaggcaaacgcaggcaaccactttcatccatcaagtatttggcgggtatctaagg
tccagagtcaaatgtttaaactgcaaagcagtctccgatacatttgacccttttctggat
atcactctggaaataaagacggctcccagtgtctccaaggctctggagcagttcgtcaag
ccagaacagctggatggagaaaacgcctacaaatgcaccaagtgcaaaaaaatggtcacg
gcctcaaagagatttaccatccaccgcagcgccaacgtgctcaccctctcactcaaacgc
tttgcgaacttcagcggaggcaaaatcacaaaggatgtgaaatatccagagtacctggac
ctacggcccttcatgtctcagtcccaaggcgagccccaggcctacgggctgtacgccgtg
ctggtccattctggattcagctgtcatgctggacactacttctgctatattaaggcgagc
aatgggcagtggtatcagatgaacgactcctctgtgtctgtcagtgacatcaggtctgtg
ctcaaccagcaggcctacgtcctcttctacatcaagtccagcgatatgaagaaaacaggc
gactacagccacatgagccataattcaggcatccctggtcagtcatctccacgtccggtg
gtgataccacgcattaacaccaccgttcaccataacaacattggcttcataggtccccag
ctgccaccacacatgaccaagagcgctctccatgtcaatgggaatggatctctgagggac
tatcccactaactccaagcccagcaccagcagcagtgttgtgggaaaacctagccatgga
ctggcctcttcctcttcttccatctcccactcaatcagccgacccacaatgctcccagac
cacgacaaacgccagaagctttcattcttcattggacaaggcaaacagaaccgcccatcc
tcctcctcctcttcctcctcctcctcctcgtcctcttacagccagccgtcctctgccagc
agcagctcctcctccagctctttatcctcctcacagtctacctcagacgtccactcagac
attcgctttgttccacgtcagattaaccacgttaacggcacgtcttgcagtaacggcaat
cgccacactggagggaacggagcgtcgttcctggtgccgtacggccaggagtcctcagag
gaatcagaccaggagaacaccggtactctggataacggctgtttagcaaagtctcacctt
aatggaaacaacagaacgggagaagtctttaataaatctgctcaagccaccaacggcgag
tcgggagtgcaccacaatggtaacggattgaacggaccaacatatggcgtctctaaatcc
agtcagaacggacaccattatggacaccacaaagtgaatggacacagcacccctgataaa
atcgctgacaacaatcacagcagttcatcctctgtagctactaatggactagacagtgac
cacagtcaaacaagcgaagagacgcataattctgcctcgtcccaggccacttcttctcag
agcgtccaccctcctcctgccagtgaaagccagcacctctccactcctgacacaagggct
aaaactgtgtctgaacccctgcctcagcatacagcatcctccgctgttagctctctacct
tccgctactgctacaaagacccatcctgtcccatctagagaatctgcttcctcttctgcc
catcatggcaacgtcaatgcggccttatccaccccgccagaatgctcccaaggcaccaat
ggggcctccgcagctccacagaaggtcagcagagttgaggacgacgcagtggatcaacca
cagaccagtgctccgtcagcagggactgaagggcgtacaggtgctaaggagcaacaccag
tctaagcccagtcctaaaggcaatgaaggacaatcttctcgagacagggagagagacaga
ctgtactctgactggagcagagacagagagagacattacagggacaggagtcaggagcga
gaaagtgatggtgatcgccatcggtacagacgggactaccgagatcaccagcaccatcgc
tcgtacagggatcgcttgcctcctcacaatcgttcctccagggactgggactctgaacgt
cgctgggaacggactctccatcaccccagggagcgtgatcgtgacaggtgctctcaccat
taccaccactatcaccactaccggtccagagaggactgggaccgcaggcagaggggacac
ggttatcccaaccgtgaggagtctcacagtcgctggaggtggcaggaggagagtcgagaa
tcccgggcgatgaaggacaagaccaacggcagggagagggactattactcgtcaaaggag
gagacttcctcgcccaccacggcggcggaaacctcaacaaagtcaaagggctcgccgcct
cgggctcgtccctcctcgtttgaatctgctcaaaacagggaggatcaaaatcacaagagg
acctctgatcctctgagcaaggagagggacgatagctcggaggcacgtcgctctaagaaa
cacaaaaagagcaagaaaaagaagaagtcgaaggataaagacagacacagagagagtgga
agctccgacgtggattcagaccgaggcaccgaaacaaaaaagaggaagaagagaaagcgg
aggcagcgggacagcgatggcgagcagcacagcccgggagcttcccggagccacaagaac
agaagcagcgaggagagggagagccgcaagcgacgatactatgacaccaaggacactaaa
cacgacaacggtttctcaccagaaaaatgccggcgaacagaatacgccgatggcagcgga
gaccatctactgcccaccaaccacacctcacccacaaacggttcaactcaccgccatctt
aacggacacacaggaaacggttacagccaagccaacggcgactcccacggattctccagt
ggcttgaaacattga
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